Longicatena caecimuris: L3BBH23_09920
Help
Entry
L3BBH23_09920 CDS
T07231
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lcg
Longicatena caecimuris
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcg03009
]
L3BBH23_09920 (rlmD)
Enzymes [BR:
lcg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
L3BBH23_09920 (rlmD)
Ribosome biogenesis [BR:
lcg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
L3BBH23_09920 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
MTS
Methyltransf_15
Methyltransf_25
TRM5-TYW2_MTfase
TRM
PrmA
Methyltransf_4
N6_N4_Mtase
Methyltr_RsmB-F
Methyltransf_11
PCMT
RrnaAD
Methyltrans_SAM
UPF0020
RsmJ
Methyltransf_32
CMAS
MethyltransfD12
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
BCT44547
LinkDB
All DBs
Position
1085335..1086696
Genome browser
AA seq
453 aa
AA seq
DB search
MLRSGQILTGTIAYLDESSNGILMAGKDKVFVRHVLAKEKVKVKIQKRLKEGYSANVIEI
LQKDKERIKPVCGIYERCGSCHLMHMSAQGQKHQKLSYLQKLCAKNKQLHIKAEEIATMK
HPYHYRNKMIIGFQKDKQGKLQAGFYEEFSHHIIPYEQCLLHPEICDAILHTITALMIKL
RIEPYDEDKRKGLLRHVVIRYGMLSKQIMVVLVINQQVFPARKAFVQELLKKHPQITTIV
QNVNTRKTSIVLGEQERILYGPGYIEDTLCGLQFRISAKSFYQINHEQCEVLYKKGMELL
QLTGKETVLDAYCGIGTIGMYAAQFAKQVIGVELNKDAVEDAKNNAKLNQIRNIRFVCDD
AGKFMQKMAAKKERLDVVILDPPRSGSSEAFIRSVATIRPKKVLYISCNPQTQLRDLQLF
QKYGYVGDVLYGVDMFPNTFHVESIVLMSRKEK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgttaagaagtggacaaatcctaaccggaacgattgcttatttagatgaatccagcaat
ggtattttgatggctggcaaggataaggtgtttgtacgtcatgtattggcgaaagaaaaa
gttaaggtgaaaatacaaaagcgtttgaaagaaggttatagtgcaaatgttatcgaaatt
cttcagaaagataaggaacgcataaaaccggtttgtggaatttatgagcgttgtggcagc
tgtcatttaatgcacatgagtgcgcaggggcaaaagcaccagaagctatcctacttacag
aagttgtgtgcaaaaaacaaacagttgcacatcaaggcagaggaaattgccacaatgaaa
cacccatatcattatcgcaataagatgatcattggttttcaaaaggataaacaagggaaa
ctgcaggcaggcttttatgaagaattttcacatcatattatcccttatgaacaatgcttg
ctgcatccggaaatctgtgatgctatcttacatacgattacggcattgatgataaagctg
cgcattgaaccttatgatgaggataagcgaaaagggttacttcgtcatgttgtcatacgt
tatggtatgcttagtaagcagatcatggtggtactggtcatcaatcagcaggtattccca
gcacgtaaggcatttgtgcaggagctattgaaaaagcatccgcagataacgaccattgta
caaaatgtgaatacacgtaagacgagcattgtcttaggtgaacaggaacgtattttatat
ggtccgggttatattgaagataccttatgtggcttacagtttcgcatatcggcaaaatct
ttctatcagattaatcatgagcaatgtgaagtgttgtataaaaaaggtatggagctgtta
cagttgacaggcaaagaaacggttttagatgcctattgtgggattggaacgattggcatg
tatgcagcacagtttgctaagcaggtcattggtgtggagctgaataaggatgcagtggag
gatgctaagaataatgcgaagttgaatcaaattcgtaatattcgttttgtttgcgatgat
gccggtaagttcatgcagaagatggctgcgaaaaaagaacgtttggatgttgtaatctta
gatccaccgcgctcaggcagtagtgaagcgtttattcgcagtgttgcgaccattcgtcct
aaaaaggtgctgtatatttcttgtaatccacaaacgcagttacgcgatttgcagctgttt
caaaaatatggctatgtgggggatgtactgtatggtgtcgatatgtttccgaatacgttt
catgtggaaagtatcgtattgatgtcaagaaaagaaaagtag
DBGET
integrated database retrieval system
