Longicatena caecimuris: L3BBH23_13690
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Entry
L3BBH23_13690 CDS
T07231
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lcg
Longicatena caecimuris
Pathway
lcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3BBH23_13690 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcg03019
]
L3BBH23_13690 (pnp)
03016 Transfer RNA biogenesis [BR:
lcg03016
]
L3BBH23_13690 (pnp)
Enzymes [BR:
lcg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
L3BBH23_13690 (pnp)
Messenger RNA biogenesis [BR:
lcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
L3BBH23_13690 (pnp)
Transfer RNA biogenesis [BR:
lcg03016
]
Prokaryotic type
tRNA degradation factors
L3BBH23_13690 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_2
KH_DEAH11
CsrA
Motif
Other DBs
NCBI-ProteinID:
BCT44924
LinkDB
All DBs
Position
1470474..1472681
Genome browser
AA seq
735 aa
AA seq
DB search
MAKQTFRLEFCGRVLTVETGEVAKQAGGSALVRYNDTVVLSTATASKQAKEGIDFFPLTV
SFEEKLYSVGKIPGGFLRREGRPSEHATLTARMIDRPIRPLFAEGFRNEVQVVNTVLSVD
QECTPEMTAMFGASLALCVSDIPFNGPIAGVIVGRVDGEYVINPTPEQLEKSDIHLTVAG
TKYAVNMVEAGAKEVDEDAMLGAIMFGHEHIKKLVAFQEEIAAAIGKEKMEVTLYTVDEA
IDQEVRENFEADIRAAVSIEKKLERYGKIDELTEAALARFEEKEYASESAKAKALKQVKE
ICHGIEANEVRRLIIEDKVRPDGRKIDEIRPLDSQVDILPRVHGSALFTRGETQVLSVTT
LGPMNDNQIIDDVTDVEYKRFMHHYNFPPYSVGETGRMGNPGRREIGHGALGERALSQVL
PSEEEFPYTIRTVAEVLESNGSSSQASICAGTMSLMAAGVPIKAPVAGIAMGLIMDEDSG
KYTVLTDIQGMEDHFGDMDFKVAGTSEGITALQMDIKVAGITEDVFREALSQAKGARAQI
LENMMTAIDKPREDVGTYAPKIEQFYIDPEKIREVIGPNGKMINKIIEACDEVKIDIEDD
GHVVIYHMNREAITKAANMIRDIVRVAKVGDIYEGKVVRIEKFGAFVNLFPGTDGLLHIS
KICHERVEKVEDKLNIGDTIKVKVMEIDDRGRVNVSAKALLPRPKKEEKQLVKKDEVPAE
ETVETKKEETPAVES
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaacaaacatttcgtttagagttctgtgggcgggtgctcacagtagaaactgga
gaagtagcaaaacaggccggaggaagtgctctggtaagatataatgacaccgttgtttta
tcaacagctactgccagcaaacaggcaaaagaagggatcgatttctttccattgactgtt
tcatttgaagagaaactatattctgttggtaagattcccggaggctttttaagaagagaa
ggaagacctagtgaacatgcaacattgacggctcgtatgatcgatcgtccgattcgtcct
ttatttgcggaaggtttccgtaatgaggtacaggttgtgaatacggtgctttctgttgat
caggaatgcacaccggaaatgactgcaatgttcggagcatctttggcattatgtgtatcg
gatattcctttcaatggtccgattgccggagtaatcgttggacgtgtagatggcgaatat
gtcattaatccaacaccggaacaattagaaaaaagtgatattcacttgactgttgccggt
acaaaatatgctgtaaacatggtagaggctggagcaaaagaagtcgatgaagacgctatg
cttggagctatcatgttcggtcatgaacatattaaaaaattagttgctttccaagaagaa
attgcggcagctatcggtaaagagaaaatggaagtaacactgtatactgtagatgaagca
attgatcaggaagtacgggaaaactttgaagccgatattcgcgcagcggtgtctattgaa
aagaaattggagcgctatggtaagattgatgaattaacagaagcagcgctagctcgcttt
gaagaaaaagaatatgcatcagagagtgcaaaagccaaagctttgaagcaggtaaaagaa
atctgtcatggcattgaggcaaatgaagtacgtcgtttgatcattgaagataaagtacgc
ccagatggacgtaagattgatgaaatccgtccattggattcacaggttgatattttacca
agagtgcatggcagtgcgttgtttacacgtggggaaacacaggtattatcggtaacgacg
ttaggtccgatgaatgataatcagatcattgatgatgttaccgatgtagaatataaacgt
tttatgcatcattacaatttcccaccatattctgttggtgaaacaggaagaatgggcaat
ccaggccgtcgtgaaatcggtcatggtgctttgggagaacgtgctttatcacaggtattg
cctagtgaagaagaattcccatatacgattcgtacagtagcggaagttttggaatcaaac
ggttctagttcgcaggcatctatctgtgccggcacaatgtctttgatggctgctggagtt
cctattaaggcacctgttgcgggtattgcaatgggcttgatcatggacgaggatagcggg
aagtataccgtattgaccgatattcagggtatggaagatcattttggcgatatggacttt
aaggtagcgggaacaagtgaaggtattacagcactgcagatggatatcaaagttgctggt
attacagaagatgtcttccgggaagctttgtcacaggccaaaggtgcgcgtgcacagatt
ctggaaaatatgatgactgctattgataaaccacgtgaagatgttggtacatatgcacct
aagatcgaacaattctatattgacccagaaaagattcgcgaagtcattggacctaatggt
aagatgattaataagatcatcgaagcttgcgatgaggtcaaaattgatattgaagacgat
ggacatgtggtcatctatcatatgaaccgagaggctattaccaaagctgcgaatatgatc
cgtgacattgtacgtgttgcaaaagtcggtgatatttacgaaggtaaggttgtacgtatt
gaaaaattcggagcctttgtaaatctgttcccgggtacagatggcttattgcatatctca
aagatttgtcatgagcgtgttgaaaaggttgaagacaagctgaatattggtgataccata
aaagttaaggtgatggaaatcgatgatcgcggacgtgtcaatgtcagtgcgaaagcatta
ttgccaagacctaaaaaagaagaaaaacagcttgtgaaaaaagatgaagtacctgcagaa
gaaacggttgaaacaaaaaaagaagaaacaccggctgtagaatcataa
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