Longicatena caecimuris: L3BBH23_14770
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Entry
L3BBH23_14770 CDS
T07231
Symbol
cshB
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshB
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lcg
Longicatena caecimuris
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcg03019
]
L3BBH23_14770 (cshB)
03009 Ribosome biogenesis [BR:
lcg03009
]
L3BBH23_14770 (cshB)
Enzymes [BR:
lcg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L3BBH23_14770 (cshB)
Messenger RNA biogenesis [BR:
lcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L3BBH23_14770 (cshB)
Ribosome biogenesis [BR:
lcg03009
]
Prokaryotic type
rRNA helicases
L3BBH23_14770 (cshB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BCT45032
LinkDB
All DBs
Position
complement(1576846..1578207)
Genome browser
AA seq
453 aa
AA seq
DB search
MSKYSDYMFQKHTKMFIELEKFIEPTPIQQAVIPMACKGKDIIGISATGTGKTHAFLIPI
MEKVDSSKPCVQAVITAPTRELALQIYQRCEKMSEADPKLVIRLITGGIEKSRMIEQLKV
QPHIVVGTPGRIKDLFLNEQVLRVDTADIMVVDEADMTLEFGFLEDVDAIAGKMRKDLQM
MSFSATIPQELRLFLKKYMDHPQTVQIEEQSAFHPKIQHILVPVQHKTYAEKVLEILPSF
TPYVCLIFANTRSEAANVASNMRDAGYGVIELHGDLTPRERTKAMKDLSNLQKSYVVATD
IAARGIDIEGISHVISMGFPKELDYYIHRSGRTGRAGHEGICYALYEKKDDTAIRQLEVR
GIHFDHKTIKNGQWCDLEPLHKKKVRKDDPLEKEIAKIVSRKKKKVKPGYKKKRQQEVEK
LKRKAKRAMIQEDIQRQKKERAKQKMLEKRNSE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaatatagcgattatatgtttcaaaaacatacaaaaatgtttattgaacttgaa
aaatttatagaacctacaccgattcaacaggcggtaatccctatggcttgtaaaggaaaa
gatattatcggtatttcagcgacagggacagggaagacacacgcttttttgattcctatt
atggaaaaagtagacagcagtaaaccttgtgtgcaggcggtaatcactgcacctaccaga
gaattagccttacagatttatcagcgatgtgaaaagatgagtgaagcggatcccaaactc
gtcatccgtttaattacaggcggaattgaaaagagccggatgattgaacaattaaaagtt
caaccacatattgttgtaggaactccaggtcgtattaaggacttgtttttaaacgaacag
gtcttgcgcgtggataccgcagatatcatggtggtggatgaggctgatatgactttagaa
tttggctttttggaagatgtagatgcgattgcagggaagatgcgcaaggacttgcagatg
atgagtttttcagcaacgattcctcaggagctgcgcttgtttctaaagaaatatatggat
catccgcaaactgtacaaattgaagaacaaagtgcatttcatcctaagatccaacatatt
ttagtgcctgtccagcataaaacatatgctgaaaaagtattagagattttaccttctttt
accccatatgtttgcttaatcttcgctaatacgcgaagtgaagctgctaatgtagcaagc
aatatgcgagatgcaggttatggtgtaatagaattgcatggagatttaactccaagagag
cgcacgaaagcgatgaaggatttgtccaatttgcaaaaatcatatgtagtggcaaccgat
attgcagcccgtggcattgatattgaagggatatctcatgttatatcgatgggatttcct
aaagaattagattattatatccatcgtagcggacgtactggcagagcaggacatgagggt
atctgttatgcactatatgaaaaaaaagatgatactgctatacgtcagttagaagttcga
ggcattcattttgatcataaaaccataaaaaatggtcagtggtgcgatttagaacctttg
cataagaagaaagtacgcaaagatgacccattagagaaagaaattgcaaagattgtttct
cgtaagaagaaaaaagtaaagccaggttataagaaaaagcgtcagcaggaagtagaaaaa
ttaaaacggaaagccaaacgtgctatgattcaagaagatattcagcgtcaaaagaaagaa
cgtgctaaacaaaagatgttagagaagaggaatagcgaatga
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