Longicatena caecimuris: L3BBH23_15780
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Entry
L3BBH23_15780 CDS
T07231
Symbol
rnj_1
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lcg
Longicatena caecimuris
Pathway
lcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3BBH23_15780 (rnj_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcg03019
]
L3BBH23_15780 (rnj_1)
Messenger RNA biogenesis [BR:
lcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3BBH23_15780 (rnj_1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
ODP
Motif
Other DBs
NCBI-ProteinID:
BCT45133
LinkDB
All DBs
Position
complement(1684521..1686182)
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AA seq
553 aa
AA seq
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MDQVRIFALGGLDEDGKNMLVVEVNEAIFIIEAGLKYPDTGQLGVEFIIPDFSYLIENKE
RIQGIFITHAHDDVVAALPYLLKQVNAPVYTGALTANIIHEMLKKEGIKNAKIHRLKRCS
KQTIGGVKIRTFPMTHAFPDNFGLAISTDQGYIVYTGEFIVDYDMLQKEYLCDLNELSDI
GKKGVLCLLCESQGADKSGHTAPKHRITSLIEPIFEASEGTRILISCYSQSLFRIIEIIE
LAKKFNRKIFFHDKGIRELLKHLETMKYYRVPKEMEINEKNFSDDMEDVVVLISGNGKNL
FRTMTNIANHEDAHVSFRTSDTIIVASPIVSGTELDASNMENEIYKEGGKIYTLDSKTVL
SMHPSSEDLKMMLYLFQPKYYIPIKGEYRHLYVNANLATKMGYSPDRILILENGQIALFE
NKILKSVAQRLELEDTMIDGKENWDVTGVVLKDREVLSTDGVMIIGVGVNHKTKEISNGP
DVQTRGLIYLKDAEYIIKEVGNIMENCIEKAVKEKRYDNLTVRAEARDKISKYLMKETGK
RPMVLPVIMEINS
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggatcaagtacgcatttttgcgcttggtggacttgatgaagatggcaagaatatgctt
gtcgttgaagtcaatgaagctatatttattattgaagccggattaaaatatccggataca
ggacagttaggagtggaattcatcattccggatttctcttatctgatcgaaaacaaagaa
cgtattcaagggatcttcatcacccatgcccatgatgatgtagtggcagccttgccatat
ttattaaaacaggtgaatgcgccagtgtatacaggtgctttaactgcgaatatcattcat
gagatgctaaaaaaagaaggcataaagaatgcaaagattcatcgtttaaaacgctgcagt
aagcagacaattggcggtgtcaaaatacgtacattcccaatgacacatgcatttcctgac
aattttggattggcgatcagtaccgatcagggatatatcgtctatacaggagaatttatc
gtagattatgatatgcttcaaaaagaatatttatgtgatttaaacgaattaagtgatata
ggaaaaaaaggtgttttgtgtctgttgtgtgaatcccagggcgctgataagagtggacac
acggctcctaaacatcgcattacatctttgattgaaccgatttttgaagctagtgaagga
acacgaattttgatttcctgttattcccaaagtttattccgcatcatagaaattattgaa
ttggcgaaaaagtttaatcgcaagatcttttttcatgataaaggaattcgtgaactgtta
aaacatttagaaacgatgaaatactatcgcgttcctaaagagatggaaatcaatgaaaag
aactttagtgatgacatggaagatgttgtcgttttgattagtggcaatggtaaaaatctg
ttccgtacgatgacaaatatcgctaatcatgaagatgcgcatgtaagtttccgtacgagt
gatacgattattgtagccagtccaattgtcagtggtacagaattagatgccagcaatatg
gaaaacgaaatttataaagagggcggcaagatttatacgctggattctaaaaccgtatta
tctatgcatccatccagtgaagatctgaaaatgatgctgtatctcttccaacctaaatat
tatataccgatcaaaggcgagtatcgtcatttatatgtaaatgcaaatttagcaacgaaa
atggggtattcacccgatcgtattctgattttggaaaacggacagattgccttatttgaa
aataaaatcttaaagagtgtcgcacagcgtctggaattagaagatacgatgattgacggt
aaggaaaattgggatgtgacaggtgttgtcttgaaggatcgtgaggttctatcgacagat
ggggtgatgatcatcggtgttggtgttaatcataagacgaaggaaatatccaatggtccg
gatgtgcagactagagggctgatttatttaaaggatgcagaatatatcattaaagaagtc
ggtaatatcatggaaaactgtatcgaaaaagcagtaaaagaaaaacgttatgataatttg
acagtacgtgcagaagcgcgcgataagatcagtaaatatttaatgaaggaaaccgggaaa
cgcccgatggtcttaccggtcattatggaaattaattcataa
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