Longicatena caecimuris: L3BBH23_16430
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Entry
L3BBH23_16430 CDS
T07231
Symbol
rnj_2
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lcg
Longicatena caecimuris
Pathway
lcg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L3BBH23_16430 (rnj_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcg03019
]
L3BBH23_16430 (rnj_2)
Messenger RNA biogenesis [BR:
lcg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L3BBH23_16430 (rnj_2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
BCT45198
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Position
1743485..1745326
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AA seq
613 aa
AA seq
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MINHHTTNKNRAPRISQDTTNKDSYNKINTERGDTLIYAMGGLGEVGKNMYCFEHENEIL
IIDSGVRFPEDDLLGVDYVIPDYNYLVKNNRKRKILIITHGHEDHIGGIPFLLKSVDIEA
IYAPAFAVALINKKLEERKMLRGVKIVEINDRSSVKMQHFTCGFFNTTHSIPDSLGILIN
TPNGRIVETGDFKFDLTPVGSNADYQVMAYMGQIGVDLLMSDSTNSGVADFSISEKKVAA
EILDTMKKTDGRLIVATFASNVYRVSQILEAAVACGRKVIIFGRSMENVVTIGRKMGKIK
VGEEHFLKPEQLSHTPASKTCIVCTGSQGEPLAALSRIANGTHRFIKLIPGDTVIFSSSP
IPGNGASVNQVVNKLFKAGANVLTKSILGNLHTTGHASQEEQKLMLQLIKPKYFMPVHGE
YKMLKQHKETAMETGIPEENIFTCANGDVLILRNHHVYESSFRIAADDIYVDGNDISGVS
TAVLKDRKILADNGLVAAIIAIDSKENKVLCKPVIVSRGFVFIKDSQGLLKEAEMIVYDA
LKEKMKQRTTFSDLKNCVRSTLEPFLYNKTHRNPIVIPVIINSKAAMAAMAQARATRVNQ
RKTPRKPTTHEPS
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgataaatcatcatacaacaaataaaaatcgtgcaccgagaatcagtcaggatacaacg
aataaagacagttataataaaataaataccgaacgaggcgatacgctaatttatgcaatg
ggcggattaggcgaagtcggaaaaaatatgtactgctttgaacacgagaatgaaatctta
atcattgactctggtgttcgttttcctgaggacgatcttctcggtgtcgattatgtcatt
ccagattataactatctggtgaagaataatcgtaaacgtaaaatattaattatcacgcat
ggtcatgaggatcatattggaggaattcccttccttttaaaaagtgttgatatcgaagct
atttacgcaccggcttttgcggtagcgttaatcaataaaaaattagaagaacgtaaaatg
ctaagaggcgttaaaatcgtagaaatcaatgatcgtagttcggtcaagatgcaacatttc
acatgtggtttcttcaacacgacacattcgatacctgattctttgggtattttgattaat
acgccaaatgggcgtattgttgaaactggtgactttaaatttgacttgacaccggttggc
agcaatgctgattatcaggtcatggcttatatgggacagattggcgtagacttattaatg
agtgattctaccaactctggtgtagcggatttttccatttctgaaaagaaagtggcagca
gaaattttagataccatgaaaaaaacggatggacgtttaattgtagcaacctttgctagt
aatgtctatcgcgtttcgcaaatcttagaagcggctgttgcttgtggacgtaaggtcatt
atctttggacgtagcatggagaatgttgtaaccattggacgtaaaatgggtaagatcaag
gttggtgaagaacacttcttaaaaccggaacagctttctcatacaccagcatcaaagaca
tgtatcgtatgtaccggcagccaaggagaaccacttgcggcattgtctcgtattgcgaat
ggaacacatcgtttcatcaaactgattcctggtgataccgtaattttctcttcttctccg
atacctggtaacggagctagtgtcaatcaggttgttaacaaattatttaaagccggggca
aatgtcctgacaaaatcaattttaggtaatttgcatacgaccggccatgcctcacaggaa
gagcagaaattgatgctgcagttgattaagccgaaatacttcatgcctgtccatggggaa
tataaaatgttgaaacagcacaaagaaacagctatggagactggtattcctgaagaaaat
atctttacttgtgcaaatggggatgtattgattttgcgtaatcaccatgtatacgaaagc
agcttccgtattgcggctgatgatatttatgttgatggcaatgatatcagcggtgtatct
actgccgttttaaaagatcgtaagattttggcggataatggattagttgcagctatcata
gcgattgattcaaaagaaaataaagtgttatgcaaacctgttattgtatctcgtggattt
gtctttattaaagatagtcagggcttattgaaagaagcagaaatgattgtatacgatgca
ttgaaggaaaaaatgaaacagcgtacaaccttttctgatttaaagaattgcgtgcgttct
actttggaaccgttcttatacaataagacacatcgtaatcctatcgttattcctgttatc
attaattcaaaagcggctatggcagccatggcacaagctagagccacacgcgtcaatcaa
cgaaaaacgccacgaaaaccaacaacacatgaaccatcttaa
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