Longicatena caecimuris: L3BBH23_25230
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Entry
L3BBH23_25230 CDS
T07231
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K19505
sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
Organism
lcg
Longicatena caecimuris
Brite
KEGG Orthology (KO) [BR:
lcg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcg03000
]
L3BBH23_25230
Transcription factors [BR:
lcg03000
]
Prokaryotic type
Helix-turn-helix
Other families
L3BBH23_25230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PRD
AAA_5
AAA
Mg_chelatase
Sigma54_activ_2
AAA_22
AAA_2
AAA_14
RuvB_N
EIIA-man
Torsin
AAA_7
AAA_16
HTH_24
DUF815
ERGIC_N
RNA_helicase
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCT46078
LinkDB
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Position
complement(2719609..2722308)
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AA seq
899 aa
AA seq
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MLEKVRQQVLMATTRELAETGNAVAISEALHLSRNMVSQYLNQLWNEGKLVKINTRPVLF
YDVQTLEKLFSIHLKEKEFTSKKEFVKALQPQEAKDFEKLIGAQESLANVVNQCKATISY
PPNGLPLLLYGPTGTGKSFMAQLMYEYALNHQLIEADKKFLIVNCSEYANNPELLTANLF
GHKKGAFTGADKDNPGLIKLAEGGVLFLDEVHCLPPECQEKLFLFMDKGIYHMVGDNEKW
YQSSLRLIFATTEKPEEVLLKTLLRRIPMIITIPSLEERGTHERLQLIHSIFAAEETRIH
KSIYLSTLVYQTLLSTTFNANIGELKNAIQASCVNALFHADPNKDRLEIRAYNLPETLKE
PKMNVPSMTEQKLISVHELAKFVSHERAILKCNEELLKAYDARENSDLFLKTACQSIDEY
QETIVFQKKKTIRKNEYLQGIVSNIFDMLSSRYGFKFVNNDVIAIASYIDDYSRNLLEMN
NWLEQEKKHVKQLLSYIKSEWHREYAIAQEIVENLTVNLDMEFDAMFTSVLALNLKKLNR
ITDLNKRIGIIIAHGFSTASSMADAANKLLGRYVFDAMDMPLQLSSTQIIEQLNRYLAKI
PQYEELFLLVDMGSLEEIYKGLEVSNASIGIMNNVTTRLALEIGQGIISNTPMKEIFETA
VDYSSANYHIVEHKNREKVILCSCASGMGTAEKLKKILVDSLPCDLPIHVYTYDYNTLLE
KQLHDAFFENYEVICIVGTLNPNIPDIRFIPIEDLIINDTLDELHDYFKDYISDSEMKTF
QQNILKNFSLSNIMNNLTILNPSKLLEHVADAIDKLQNDLQVRLTNNTCVGLYVHVCCLI
ERLVTRKSIETYTNVEDFAEKEIAFIKSVKKAFSVVENYYSVEIPVEEIGYIFDYVKNN
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaaaggtaagacaacaggtccttatggcaaccacaagagaattagcagaaaca
ggcaatgcagttgcgattagtgaagcgttgcatttaagccgtaatatggtatcccaatat
ttaaaccagctatggaatgaagggaaacttgttaaaataaatacccgtccggtgttgttt
tatgatgtgcagacattagagaagttattttctatccatctgaaggaaaaggaattcaca
tcgaagaaggaatttgtaaaagccttgcagccacaggaagcgaaagattttgaaaagctg
attggagcgcaggaaagcttagccaatgtggtaaatcaatgtaaggctaccatatcatat
ccgccaaatggactgcctttattgctgtatggacctaccggtaccggaaaaagcttcatg
gcacagttaatgtatgaatatgccttaaatcatcaattgatcgaagcggataaaaaattt
ctcatcgttaactgtagcgaatatgccaataatccggagttgttaacggcgaatctattt
ggtcataaaaaaggcgcatttaccggtgcggataaggataatcccggtcttatcaaactg
gcagaaggcggtgtgctcttcttggatgaggtgcattgcctgccaccggaatgtcaggaa
aagctcttcttatttatggataagggcatttatcacatggtgggagataatgaaaagtgg
tatcagtcttctttacgtttaatctttgcgacaacggaaaaaccagaagaggtattatta
aaaaccttgctgcgccgtattccgatgattatcacgattccttccttagaagagcgtggc
acgcatgagcgtctacagctcattcactccatctttgcggcagaagaaacgcgtatccat
aaatctatctatctttctacccttgtctatcaaaccttattatcaacaactttcaatgcc
aatatcggagaattaaaaaatgcgattcaagcaagctgtgtcaacgcgttatttcatgca
gatcccaacaaggatcgcttagaaatacgggcatataatctgccggaaaccttgaaagag
ccgaagatgaatgtgccatccatgacggaacaaaagctcatctctgtacatgaactggca
aaattcgtatcgcatgagcgcgccattctaaaatgcaatgaagaactgttgaaagcttat
gatgcaagagaaaacagtgatttattcttaaaaacggcatgtcaaagcattgatgagtat
caggaaaccatcgtctttcaaaagaaaaagaccattcgtaagaatgaatatctgcaaggt
atcgtttccaatatctttgatatgctgagttcacgttatggttttaaatttgtgaataat
gatgtaattgccatcgcttcctatattgatgattacagccgcaacctgttagaaatgaac
aattggctggagcaagaaaaaaaacacgtcaaacaattgctttcctatataaagagcgaa
tggcatcgagaatatgcgattgcgcaggaaatcgtagaaaatcttaccgtaaatttggat
atggaatttgatgcgatgtttacttctgtgctggcattaaatctaaagaaattaaatcgt
attacagatttgaataaacgtatcggtatcattattgcccatggtttcagtacagccagc
agtatggccgatgcagcgaataaactgttagggcgttatgtgtttgatgctatggatatg
ccgttacagcttagttccacacagatcattgaacagctaaatcgctatttggcaaaaatt
ccgcaatatgaagaattatttttactggttgatatgggttctttggaagaaatctataaa
ggattagaagtatccaatgccagcattggcatcatgaacaatgtcacgacacgtttagca
ctggaaatcgggcagggtattatctccaatacgccgatgaaagaaatctttgaaactgcc
gttgattacagtagtgccaattatcatatcgtggaacataagaatcgcgaaaaggtcatt
ctctgttcctgtgccagcggtatgggaactgccgaaaagctgaaaaagattctggtggat
tccttaccatgcgacttaccgattcatgtctatacgtatgattacaataccttattggaa
aaacagctgcacgatgccttctttgaaaattacgaagtcatctgcattgttggaacactg
aatcctaatatacctgacatccgctttataccaatcgaggatttaattatcaacgatacc
ttggatgagctgcacgattattttaaggattacatcagtgacagtgaaatgaagaccttc
caacaaaatatcttaaagaacttctcgttaagtaatatcatgaacaatctgacgatctta
aatcctagcaagctattagaacatgtcgccgatgccattgataagctgcaaaatgatttg
caggttcgcttgacgaataatacttgtgtaggcttgtatgtgcatgtctgttgcttgatt
gaacgtctggttaccagaaagagcattgaaacgtatacgaatgtagaagattttgcggaa
aaagaaatagcgtttatcaaatcggtgaaaaaagcgtttagcgtcgttgaaaattactat
agcgtcgaaataccggtggaagagattggctatatcttcgactacgtgaagaataattaa
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