Leptothrix cholodnii: Lcho_0003
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Entry
Lcho_0003 CDS
T00681
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
lch
Leptothrix cholodnii
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lch03032
]
Lcho_0003
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_0003
Enzymes [BR:
lch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Lcho_0003
DNA replication proteins [BR:
lch03032
]
Prokaryotic type
DNA Topoisomerases
Lcho_0003
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Lcho_0003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
ACB32279
UniProt:
B1Y549
LinkDB
All DBs
Position
2965..5559
Genome browser
AA seq
864 aa
AA seq
DB search
MTDPKSLPQEPNGSADADGVTRRDLPDVEGVPVSTGAEASAAYGSDSIQILEGLEAVRKR
PGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIIVTIHTDNSISVIDNGRGIPTGV
KMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHGVGVSCVNGLSTWLRLTVRRDG
RAHFMEFRQGIPQDRVLERRDGFEVSPMKVIGETDKRGTEVHFLPDHTIFSNIDFHYEIL
SKRLRELSFLNNGVKIRLVDERNNKEDNFAYAGGVKGFVEFVNKGKKVLHGNIFHARGDK
MSDNQTNVGVEVAMQWNESYNENVLCFTNNIPQRDGGTHLTGLRAAMTRVINKYIDDNDI
AKKAKVEITGDDMREGLACVVSVKVPEPKFSSQTKDKLVSSEVRAPVEDIVSRLLTDWLL
ENPTDAKTICSKIVDAARARDAARKAREMTRRKGVLDGMGLPGKLADCQEKDPSLCEIYL
VEGDSAGGSAKQGRDRKFQAILPLRGKILNVEKARYEKLLTSNEILTLITALGTGIGKGM
GGDDFNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFFRQMPDLVERGNIYIAQPPLYKVK
HGKHEQYLKDGSELDAYLLKVAIDGATVEPGAGKPAITGAALEELARQYVQASNVIARLS
NWMDIEALRAISDGLTLDLDDAQKAEASAVALAGALLAVGSSAEVAAEYDARTDKHHLRI
SRRHHGNIKSSVITQDFVHGADYEALSRAGITFKGLLADDATVKRGEGDKQKTAKAGDFR
VAMAWLMQQAESSVGRQRYKGLGEMNPGQLWETTMDPTVRRLLRVQIEDAIEADKVFTML
MGDEVEPRRDFIESNALRAANIDV
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgaaaagcctcccccaggaacccaacggcagcgccgatgccgacggcgtg
acgcgccgcgatctgcctgacgtcgaaggcgtgccggtctcgaccggggcggaagcgtcg
gcggcctacggctccgactcgatccagatcctcgaaggcctggaagcggtgcgcaagcgc
ccgggcatgtacatcggcgacaccagcgacggcaccggcctgcaccacctggtgttcgag
gtggtcgacaactcgatcgacgaggccctggccggccactgcgacgacatcatcgtcacc
atccacaccgacaactcgatttccgtcatcgacaacggtcgcggcatcccgaccggcgtc
aagatggacgacaagcacgagcccaagcgcagtgccgccgagatcgcgctgaccgagctg
cacgcgggtggcaagttcaaccagaacagctacaaggtctcgggcggcctgcacggcgtg
ggcgtctcctgcgtcaacggcctgtcgacctggctgcgcctgacggtgcgccgcgacggc
cgcgcgcatttcatggagttccgccagggcatcccgcaagaccgggtgctggaacggcgc
gacggcttcgaggtgagcccgatgaaggtcatcggcgagaccgacaagcgcggcaccgag
gtgcacttcctgcccgaccacacgatcttctcgaacatcgacttccactacgagatcctc
agcaagcggctgcgcgaactctcgttcctgaacaacggcgtcaagatccgcctggtcgac
gagcgcaacaacaaggaagacaacttcgcctacgccggcggtgtcaagggcttcgtcgag
ttcgtcaacaagggcaagaaggtcctgcacggcaacatcttccacgcccgcggcgacaag
atgagcgacaaccagaccaacgtcggcgtcgaagtggcgatgcagtggaacgagagctac
aacgagaacgtgctctgcttcaccaacaacatcccgcagcgtgacggcggcacccacctg
accggcctgcgtgcggcgatgacgcgtgtcatcaacaagtacatcgacgacaacgacatc
gccaagaaggccaaggtcgagatcaccggcgacgacatgcgcgagggtctggcctgcgtc
gtcagcgtcaaggtgcccgagcccaagttctcgagccagaccaaggacaagctggtgtcg
agcgaagtgcgcgcgccggtcgaggacatcgtcagccgcctgctgaccgactggctgctc
gagaacccgaccgacgccaagaccatctgcagcaagatcgtcgacgccgcgcgcgcccgc
gacgccgcccgcaaggcgcgcgagatgacgcgccgcaagggcgtgctcgacggcatgggc
ctgcccggcaagctggccgactgccaggagaaggacccgtcgctgtgcgagatctacctg
gtggagggcgactccgccggcggctcggccaagcagggccgcgaccggaagttccaggcc
atcctgccgctgcgcggcaagatcctgaacgtcgagaaggcgcgctacgagaagctgctg
accagcaacgagatcctgacgctgatcaccgcgctgggcaccggcatcggcaagggcatg
ggcggggacgacttcaaccccgacaagctgcgctaccaccgcatcatcatcatgaccgac
gccgacgtcgacggcgcccacatccgcaccctgctgctgaccttcttcttccgccagatg
cccgacctggtcgagcgcggcaacatctacatcgcccagccgccgctctacaaggtcaag
cacggcaagcacgagcagtacctgaaggacggcagcgagctcgacgcctacctgctcaag
gtcgcgatcgacggcgccacggtcgaacccggtgccggcaagcccgcgatcaccggggcc
gcgctcgaagagctcgcccgccaatacgtgcaggccagcaacgtgatcgcgcggctgtcg
aactggatggacatcgaagcgctgcgtgccatcagcgacggcctgacgctcgacctcgac
gacgcacagaaagccgaagccagcgccgtggccctggccggcgcgctgcttgcggttggt
agttcggccgaggtggccgccgaatacgacgcccgcaccgacaagcaccacctgcgcatc
agccgccgccaccacggcaacatcaagagcagcgtcatcacgcaggacttcgtgcacggc
gccgactacgaggcgctcagccgcgccggcatcaccttcaagggcctgctggccgacgac
gccaccgtcaagcgcggcgagggtgacaagcagaagaccgccaaggccggcgacttccgc
gtcgcgatggcctggctgatgcagcaggccgaatcgagcgtcggccgccagcgctacaag
ggcctgggcgagatgaatcccggccagctctgggaaacgacgatggacccgaccgtgcgc
cgcctgctgcgcgtgcagatcgaagacgcgatcgaggccgacaaggtgttcacgatgctg
atgggcgacgaggtggagccgcggcgggatttcatcgagagcaatgcgttgagggcggcg
aacatcgacgtgtga
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