Leptothrix cholodnii: Lcho_0238
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Entry
Lcho_0238 CDS
T00681
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03030
DNA replication
lch03430
Mismatch repair
lch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lcho_0238
03430 Mismatch repair
Lcho_0238
03440 Homologous recombination
Lcho_0238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lch03032
]
Lcho_0238
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_0238
Enzymes [BR:
lch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Lcho_0238
DNA replication proteins [BR:
lch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Lcho_0238
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Lcho_0238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DEDDh_C
DNA_pol_A_exo1
HisKA
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ACB32513
UniProt:
B1Y7R5
LinkDB
All DBs
Position
254405..256600
Genome browser
AA seq
731 aa
AA seq
DB search
MKPGLRLAGLLGLVGVLLLLWLGLTGAMVWSSLAQAERAVVRAALEPHAGLVVMAFGLGM
LGLAAALHAWLLPRLAAPAQLLDQVRVLRDTDVQREITPAGSATLRALAEAVNELVRQRE
ALRQDMAAQVLAASRGVELERSRLAALMAELTQSVVVCNLDGRVLLYNNRARMQFRALSS
APSLAGGSELLGLGRSIYAAFDPKLVTHALESIQQRLQRGADNPLAQFVTITRSGQLLRV
QMAPVREVAPADGNAVADPAALSGFVLMLDNVTREFEQDTLRDQLLHGLTEGSRGSLANL
QAAVEMLDDDGLDDALRQRFHGVIRDEVRAMSARIQTLADSATEGIKTRWPMEDMLGADL
VAAAQRRIESQLALRVSQAEVDTALWLKVDSYSLLLALHYLAGRLQDEFETKLVQLRIAA
APGGQHAHLDLIWMGQSLSTETVMSWELDPMRIGAETSPLSVRDVADRHGGEFWFERERV
RHQAFFRFLLPLAAPQEQLDASRLMSAMHAEGRPEFYDFDLFKRLEQHHVLDERRLVDLA
YTVFDTETTGLNPSDGDEIIQIGATRISGGKLRRQESFEQLVDPQRPIPPAGIPIHGIKP
DMVAGQPTIDHVLPAFHAFAQDTVLVAHNAAFDMRFLQLKQDRTGLVFDQPVLDTLLLSA
VVHPNQESHRLEAIAERFSITVVGRHTALGDAMVTAEVFVRLIPLLHAMGIETLGQAREA
AQKTYYARLKY
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaccgggcctgcgactggccggcctgctggggctggtcggcgtcttgctcctgctg
tggctggggctgaccggcgcgatggtctggtcgtcgctggcgcaggccgagcgcgcggtg
gtgcgggcggcgctcgaaccgcatgcggggctggtggtgatggccttcggtctcggcatg
ctgggactggccgcggcgctgcatgcctggctgctgccgcggctggccgcacccgcgcag
ctgctcgaccaggtgcgcgtgctgcgcgacaccgacgtgcaacgcgagatcacgcccgcc
ggcagcgccacgctgcgcgcgctggccgaggccgtcaacgagctggtgcgccagcgcgag
gcactgcgccaggacatggccgcgcaggtgctcgccgccagccgcggcgtcgagctcgag
cgcagccgactggccgcgctgatggccgagctgacgcagagcgtggtggtctgcaacctc
gacggccgggtgctgctctacaacaaccgtgcccgcatgcagttccgcgcgctgtcgtcg
gcgccgtcgctggcgggtggctcggagctgctcggcctgggccgctcgatctacgccgcc
ttcgatcccaagctggtcacgcacgcgctcgagagcatccagcagcgcctgcagcgcggg
gcggacaacccgctggcgcagttcgtcaccatcacccgctcgggccagctgctgcgggtg
cagatggcgccggtgcgcgaggtcgcacccgccgacggcaacgccgtggccgatccggcg
gcgctgtcgggtttcgtgctgatgctcgacaacgtcacccgcgagttcgagcaggacacc
ctgcgcgaccagctgctgcacggcctgaccgaaggcagccgcggctcgctcgccaacctg
caggccgcggtcgagatgctcgacgacgacggcctcgacgatgccctgcgccagcgcttt
cacggcgtcatccgcgacgaggtgcgcgccatgagcgcgcgcatccagaccctggccgac
agcgccaccgaaggcatcaagacccgctggccgatggaggacatgctcggcgccgacctg
gtcgccgccgcgcagcgccgcatcgagagccagctcgcgctgcgggtgtcgcaggccgag
gtcgacaccgcgctgtggctcaaggtcgacagctactcgctgctgctggcgctgcattac
ctggccgggcggctgcaggacgagttcgagaccaagcttgtgcagttgcgcatcgccgcg
gcgccgggcggccagcacgcccacctcgacctgatctggatgggccagtcgctcagcacc
gagaccgtgatgagctgggagctcgacccgatgcgcatcggcgccgagaccagcccgctg
agtgtgcgcgacgtcgccgaccgccacggcggcgagttctggttcgagcgcgagcgggtg
cggcatcaggccttctttcgcttcctgctgccgctggccgcgccgcaggaacagctcgac
gccagccgcctcatgtccgccatgcacgccgagggccggccggagttctacgatttcgac
ctcttcaagcgcctggagcagcaccacgtgctcgacgagcgccgcctggtcgacctggcc
tacaccgtgttcgacaccgagaccaccggcctcaatccgtccgatggcgacgagatcatc
cagatcggtgccacccgcatcagcggcggcaagctgcgccggcaggagagcttcgagcag
ctggtcgatccgcagcggccgataccgcccgcgggcatcccgatccacggcatcaagccc
gacatggtggccggccagccgaccatcgatcacgtgctgccggccttccacgcctttgcg
caggacaccgtgctggtggcgcacaacgccgccttcgacatgcgtttcctgcagctcaag
caggaccgcaccgggctcgtcttcgaccagccggtgctcgacacgctgctgctgtcggcg
gtggtgcaccccaaccaggaatcgcaccgactcgaggcgatcgccgagcgcttcagcatc
accgtggtcggccgccacaccgcgctgggcgacgcgatggtgacggccgaggtcttcgtg
cgcctgatcccgctgctgcacgcgatgggcatcgagacgctcggccaggcgcgcgaggcg
gcgcagaagacctattacgcgcggctcaagtactga
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