Leptothrix cholodnii: Lcho_0592
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Entry
Lcho_0592 CDS
T00681
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lcho_0592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lch03019
]
Lcho_0592
03009 Ribosome biogenesis [BR:
lch03009
]
Lcho_0592
Enzymes [BR:
lch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Lcho_0592
Messenger RNA biogenesis [BR:
lch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Lcho_0592
Ribosome biogenesis [BR:
lch03009
]
Prokaryotic type
rRNA processing factors
Lcho_0592
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ACB32867
UniProt:
B1XZM1
LinkDB
All DBs
Position
639881..643057
Genome browser
AA seq
1058 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDFETEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRSYFKEGVSVRDAKISDVISNGQELLVQVEKEERGNKGAALTTFVS
LAGRYLVLMPNNPRGGGVSRRIEGEQREELKENLEQLDYPKGMSLIARTAGIGRSAEELQ
WDLNYMLKLWTAIDDASKGGRGAFLIYQESSLVIRAIRDYFSADIGEILIDTDDIFEQAR
QFMLHVMPDTANRVKRYRDDAPLFSRFQIEHQIETAFSRTVHLPSGGAIVIDHTEALVAV
DVNSARATRGGDIEETATRTNLEAADEIARQCRLRDLGGLIVVDFIDMEESKNRREVETR
LRDALRTDRARVQFSSISKFGLLELSRQRLRPALSEGNHITCPRCNGTGHIRDTESSALQ
ILRIIQEESMKEGTAAVHVQVPVEVTSFLLNEKRTEITKIELKQRTTVLLVPNKHLETPN
YKLERLRHDDPRLENIQASYTMIEEPEDEVGITRREKLKAKQEPLIKGVLPDQPAPVAAP
KPEPAPAPAPVAVARPAPVAAPVAAPAAPAEGGFFGWIKKLFGGGAAAPVVVAPEPVAPP
VVAKETTGSRGERTEKGERGDRRGGRRDGAERGGERNGSGAERGERGGRRGERNGERGAE
RGAERQEARAEAIKPEAREGRENREPREPREAREPREAGGERRPRGESRGESRGESRGNG
ERRERNVEVVAGEGDAPATQRPPRGERRPAPAPVAAVAEVDTSNLAEAANSGFEETQPGS
TDGSDAANAERDGRRRRRGGRGGRRDREEQRPEGAEGLSTDAVAQPVAAAADAPVAVEGA
VGVSTQDESAAAPVDAESAEAQRDGRRRRRGRGRGRDGVEGADATEAAEGAEVVSGVTAA
EFSEELPAQAAVAAQAVVAEPVVQMAVQPVAEPVAEVPPVAAPVIAAPVVQPPAAVVIEA
QPVPAASFEPAPTVVVKPYALPLDTLAEIARGAGLEWVNSNADKVRQVQEAIANEPKPVR
VPREIKPVVLVDDGPLVLVETRRNLGQVQLPFETGSTH
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgatcaatgccacgcagcccgaagagcggcgcctggcgatcgtcgat
ggccagaaactgctcgatttcgagaccgagatcgagggccgcgaacagcgcaagggcaac
atctacaaggccgtcgtcacccgcgtcgagccttcgctggaggcctgtttcgtcgattac
ggcgaagaccgccacggtttcctgccgttcaaggaaatctcgcgcagctatttcaaggaa
ggcgtcagcgtccgcgacgccaagatttccgacgtcatttccaacggccaggaactgctg
gtccaggtcgaaaaagaagagcgcggcaacaagggcgcggcgctgaccaccttcgtgtcg
ctggccggccgctacctggtgctgatgcccaacaacccgcgcggcggcggcgtcagccgg
cgcatcgagggcgagcagcgcgaagagctcaaggaaaacctcgagcagctcgactacccc
aagggcatgagcctgatcgcgcgcaccgccggcatcggccgcagtgccgaagagctgcag
tgggacctgaactacatgctcaagctctggaccgcgatcgacgacgcgtccaagggtggc
cgcggtgcgttcctgatctaccaggagtcgtcgctggtgatccgtgcgatccgcgactac
ttcagcgccgacatcggcgagatcctgatcgacaccgacgacatcttcgagcaggcgcgt
cagttcatgctgcacgtgatgcccgacacggccaaccgcgtgaagcggtatcgcgacgat
gcgccgctgttcagccgcttccagatcgagcaccagatcgagaccgcgttctcgcgcacg
gtgcacctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctggtcgccgtc
gacgtcaactcggcgcgcgccacccgcggcggtgacatcgaggaaaccgccacccgcacc
aacctcgaagccgccgacgagatcgcgcgccagtgccgcctgcgtgacctgggcggcctg
atcgtggtcgacttcatcgacatggaggagagcaagaaccgccgcgaggtcgagacccgg
ctgcgcgacgcgctgcgcaccgaccgtgcccgcgtgcagttcagctcgatcagcaagttc
ggcctgctcgaactcagccgccagcgcctgcgcccggcgctcagcgaaggcaaccacatc
acctgcccgcgctgcaacggcaccggccacatccgcgacaccgaatcttccgcgctgcag
atcctgcgcatcatccaggaagagtcgatgaaggaaggcacggcggcggtccacgtgcag
gtgccggtcgaggtgaccagcttcctgctcaacgagaagcgcaccgagatcaccaagatc
gagttgaagcagcgcaccaccgtgctgctggtgcccaacaagcacctcgagacgcccaac
tacaagctcgaacgcctgcgccacgacgatccgcggctggagaacatccaggccagctac
acgatgatcgaggagccggaagacgaagtcggcatcacccgtcgcgagaagctcaaggcc
aagcaggagccgctgatcaagggcgtgctgcccgatcagcccgcgccggtggccgcgccc
aagcccgagccggcgcccgcgcccgcaccggtggccgtggctcggcccgcacccgttgcc
gcgccggtcgctgccccggccgcgccggccgaagggggtttcttcggctggatcaagaag
ctgttcggcggtggcgcggctgcgccggtcgtggtcgctcccgagcccgtcgcgcccccg
gtcgtcgccaaggagaccaccggttcgcgcggtgagcgcaccgaaaagggcgagcgtggc
gatcgccgcggtggccgtcgtgacggcgccgagcggggtggcgagcgcaacggcagcggg
gccgagcgtggcgagcgcggtggccgtcgcggtgaacgcaatggcgagcgtggcgctgaa
cgcggtgccgagcgccaggaagcgcgcgccgaggcgatcaagcccgaagcgcgtgagggc
cgcgagaaccgcgaaccgcgcgaaccgcgcgaagcccgtgagccgcgcgaagccggcggc
gagcgtcgcccgcgtggcgagtcgcggggtgaatctcgtggcgaatcacgcggcaatggc
gagcgccgcgagcgcaacgtcgaggtcgtcgcgggcgagggtgatgcccccgccacgcag
cgcccgccgcgtggtgaacgtcgtcccgctccggcgcccgtcgccgctgtggccgaggtc
gacaccagcaacctggccgaagcggccaacagcggtttcgaggaaacccagcccggttcg
accgacggcagcgacgcggccaacgccgagcgcgacggccgccgtcgccgccgtggtggt
cgaggtggccgccgtgaccgcgaagagcagcgtccggaaggcgccgaaggcctgagcacc
gacgccgtggcacagcccgtcgcggctgcggctgatgcgccggtcgccgtcgaaggtgct
gtcggcgtgtcgacccaggacgaaagcgccgccgcaccggtcgacgccgagtcggccgag
gcccagcgcgacggccgccgccgtcgccgcggccgtggtcgtggccgtgacggtgtcgag
ggtgctgacgcaaccgaagccgccgaaggcgctgaagtggtcagcggcgtcaccgccgcc
gagttcagcgaggagttgcctgcgcaagccgcggtcgctgcgcaagccgtggtcgccgag
ccggtcgttcagatggcggttcagcccgtggccgagcctgttgccgaggtgccccccgtg
gctgctccggtgatcgctgcgccggtcgtgcaaccgccggcggccgtggtgatcgaggcc
cagcccgtgccggcggcttcgttcgagcccgcgccgacggtggtcgtcaagccctatgcg
ctgccgctcgacacgctggccgagatcgcacgcggtgccggcctggagtgggtcaacagc
aacgccgacaaggtgcgccaggttcaggaggcgatcgccaacgaacccaagccggtgcgt
gtgccgcgcgagatcaagccggtggtgctggtcgacgacggcccgctggtgctggtcgag
acccgccgcaacctcggccaggtgcagctgccgttcgagaccggttcgacgcactga
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