Leptothrix cholodnii: Lcho_0617
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Entry
Lcho_0617 CDS
T00681
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lcho_0617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lch03019
]
Lcho_0617
Enzymes [BR:
lch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Lcho_0617
Messenger RNA biogenesis [BR:
lch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Lcho_0617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACB32892
UniProt:
B1XZP6
LinkDB
All DBs
Position
complement(664370..665809)
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AA seq
479 aa
AA seq
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MTDTPDAAELVAAPARFDSLPLDPKLLRAIVDAGYLTMTPIQAKAIPIVLDGRDVMGAAQ
TGTGKTAAFSLPLLQKMLRHENASASPARHPVRALVLAPTRELADQVANNVKTYARHSQL
RVTCVFGGIDMAPQTAELKRGVEVLIATPGRLLDHIQAKNCQLNQVEYVVLDEADRMLDI
GFLPDLQRILSYLPKTRQTLLFSATFSPEIKKLAQSYLQDPLLVEVARPNATATNVEQRF
YSVTDDDKRRTVLHILRERSITQAIVFVNSKLGAARLARSFERDGLRTSALHGDKSQDER
LKALDAFKRGEVDVLVATDVAARGLDIADLPAVFNFDIPFNAEDYVHRIGRTGRAGASGL
AVSLVSHDDNRLVSDIEQLIKKKIEIEAIELNDERPRRPPRREIVDDVAVVDAPAPRYSR
PPSRTSVDPFFERPYQADPDASPVWERGNSTPAVPSSGVSRFIKHKRKVATLLGGKLPT
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatacccctgacgcagccgaactggtagctgcccccgcccgcttcgactctctg
ccgctggatcccaagctcctgcgcgccatcgtcgacgccggatatctgaccatgacgccg
atccaggccaaggcgatcccgatcgtcctggacgggcgagacgtgatgggcgcagcccag
accggcaccggcaagacggccgcgttttcgctgccgctgctgcagaagatgctgcggcac
gaaaacgccagcgcatcgcctgcgcgccatccggtacgcgccctggtcctggcgcccaca
cgcgagctggccgaccaggtggccaacaacgtcaagacctacgccaggcacagccagctg
agagtgacctgcgtcttcggcggcatcgacatggcaccccagacggccgagctcaagcgc
ggcgtcgaggtgctgatcgcgacgccggggcggctgctggatcacatccaggccaagaac
tgccagctcaaccaggtcgaatatgtggtgctcgacgaagccgaccgcatgctcgacatc
ggtttcctgcccgacctgcagcgcatcctgagctacctgcccaagacccgccagacgctg
ctgttctcggccacgttctcgcccgagatcaagaagctggcgcagagctacctgcaggac
ccgctgctggtcgaagtggcacgcccgaacgcgacggccaccaacgtcgagcaacgcttc
tacagcgtgaccgacgatgacaagcgccgcaccgtgctgcacatcctgcgcgagcgttcg
atcacgcaggcgatcgtcttcgtcaactccaagctcggcgccgcacgcctggctcgttcg
ttcgagcgcgacggcctgcggacatcggccctgcacggcgacaagtcgcaggacgaacgc
ctgaaggcgctcgacgccttcaagcgcggcgaggtcgacgtgctggtggccaccgatgtg
gccgcgcgtggcctggacatcgccgacctgcccgccgtcttcaacttcgacattcccttc
aatgcggaagactatgtccaccggatcggccgcaccggccgcgccggggcatcgggcctg
gccgtgtcgctggtgtcgcatgacgacaaccggctggtttccgacatcgagcagctgatc
aagaagaagatcgagatcgaggcgatcgaactcaacgacgagcgcccccgtcggccgccc
cgtcgcgagatcgtcgatgacgtggccgtggtggatgcccctgcaccacgttacagccgc
ccgcccagtcgcacgagcgtcgatccgttcttcgagcgcccctatcaggccgaccccgac
gcgtcgccggtgtgggaacgtggcaacagcacgccggcggtgcccagcagtggcgtgagc
cggttcatcaagcacaagcgcaaggtggcgacgctgctgggcggcaagctgccgacctga
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