KEGG   Leptothrix cholodnii: Lcho_1161
Entry
Lcho_1161         CDS       T00681                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K07012  CRISPR-associated endonuclease/helicase Cas3 [EC:3.1.-.- 5.6.2.4]
Organism
lch  Leptothrix cholodnii
Brite
KEGG Orthology (KO) [BR:lch00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:lch02048]
    Lcho_1161
Enzymes [BR:lch01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Lcho_1161
Prokaryotic defense system [BR:lch02048]
 CRISPR-Cas system
  Type I CRISPR-Cas system
   Type I signiture cas proteins
    Lcho_1161
SSDB
Motif
Pfam: Cas3-like_C_2 DEAD ResIII AAA_22 Cas3_HD HD NAT10_TcmA_helicase PALP Secretin_N Terminase_6N
Other DBs
NCBI-ProteinID: ACB33430
UniProt: B1Y4J1
LinkDB
Position
complement(1243065..1245449)
AA seq 794 aa
MSEFWAHSPSTASKGSGHLLHDHLQSVAERACKSFMQQPGSDLAYLAGLWHDLGKYRPGF
QRYIRMAADAHIEGKLPQGSDKSHSAAGALWALEHLSKQHGAEGCVAARILQYVIAGHHA
GLDNWDDGLKPRLAGADTHREFTSALDAQPPEAVLRPPIDRPAVKTLPLPFKGPEEIPGR
FALWVRMLFSALVDADFLDTEAFMNPTTAQAREAETLPMCALLACFDTYMELKAETLVAA
GLANTLVNRRRAEVLAACRTKAAEAPGTFTLTVPTGGGKTLAGLAFALTHAVHHGKRRVV
MVIPYTSIIEQTAQVYREVFAPLGDEVVLEHHSNAESDERDETSRSRLACENWDAPVIVT
TSVQLFESLFARKTSRCRKLHNLAHSVLVIDEAQLLPVQYLQPVVDVLRLLVRDHGVTVV
LCTATQPMLTEQRHFGGRGLRGYQSGEVRAIIDDEAGLYKALQRVRVHLPSDLTTPQPWD
ATAQALQQHDAVLTIVSRRADARDLYDRLKRELPTGARGLHHLSALMCAQHRSEVIADIK
AALVIRREALACGDAAEPVRVVSTQLVEAGVDLDFPVVYRALAGLDSIAQAAGRCNREGR
LAMGEVHVFVPPKAPPAGLMRQAAQTCALVWDDIGDTDPLALDRVSRYFAHLYGNANTLD
IGDVCDALRLTVDTQAWTLPVRFRDAAENFRLIDNEEAATVIVRYRSPRCRDNVDQLIAM
LERDGPQRWLMRKLQRYGVTIYRHALQRLLACGDISELAGVPGLYVQTESDVFYDPVLGV
QVGGAPGDPAAFVF
NT seq 2385 nt   +upstreamnt  +downstreamnt
atgtcggagttctgggcacacagcccgtcgaccgcatcaaaaggttcgggccatttgctg
cacgatcacctgcagtccgtggccgaacgggcgtgcaaaagtttcatgcagcagccaggc
agtgatctggcctaccttgccgggctgtggcatgacctgggcaagtaccgccccggcttc
cagcgctacatccgcatggcggctgatgcgcacatcgaaggcaagctgccccaaggaagc
gacaagagccactcggctgccggtgcgctgtgggcgctggaacatctgtcgaagcagcac
ggcgccgaaggctgcgtggctgcacggatccttcaatacgtgatcgcggggcaccacgcc
gggctcgacaactgggacgacgggctcaagccacgcttggcaggcgcagacacacatcga
gaattcaccagcgccttggacgcacagccgcccgaagccgtattgcgccccccgatcgat
cgaccggcggtcaaaaccttgcccctgccgttcaaggggccggaagaaatccccggccgg
ttcgcgctctgggtacgcatgctgttctcggccctggtcgatgccgacttcctagatacc
gaggcattcatgaatccgaccacagcgcaggcccgcgaggctgagacgctgccgatgtgt
gcgctgctggcctgcttcgacacctacatggaactcaaggccgaaacgctcgtcgccgcc
ggcctggccaacacgctggtcaaccgccgccgtgccgaggtgttggctgcctgcagaacc
aaggcggccgaagcacccggcacgttcaccctgaccgtacccacaggcggtggaaagacg
ctcgcgggcctggccttcgcactcacccacgcggtgcatcacggcaagcgtcgggtcgtg
atggtgattccgtacaccagcatcatcgagcagaccgcacaggtctaccgcgaggtgttc
gccccgctgggtgacgaggtcgtgctcgaacaccacagcaacgccgagtccgacgagcgc
gacgaaacctcgcgctcgcgcctcgcctgcgagaactgggacgcaccggtgatcgtcacc
accagcgtgcaactgttcgagagcctgttcgcccgcaagacctcgcgctgccgcaagctg
cacaacctggcgcacagcgtgctggtgatcgacgaggcccagctactgccggtgcagtac
ctgcagccggtggtcgacgtgctgcgtctgctcgtccgcgaccacggcgtgaccgtcgtt
ctgtgtaccgccacccagccgatgctgaccgaacaacgccacttcggcgggcgtggcctg
cgcggctaccagagcggcgaggtgcgcgccatcatcgacgacgaggccgggctctacaaa
gccttgcaacgcgtgcgtgtgcacctgccgtcggacctgacaacacctcagccctgggac
gccacggcgcaggccctgcaacaacacgacgccgtgctcaccatcgtcagccgccgggct
gacgcacgagatctgtatgaccgcctgaaacgcgagctacccaccggcgcgcgcggcctg
caccacctgtcggccttgatgtgcgcccagcaccgcagcgaggtgatcgccgacatcaag
gcggcactggtcatacgacgcgaggcactggcatgcggcgatgcagccgagccggtgcgc
gtggtcagcactcaattggtggaagcaggtgtcgacctcgatttcccggtggtctatcgc
gcgctggccgggctcgactcgatcgctcaggccgccggccgctgcaatcgcgagggccgg
cttgcgatgggcgaggtgcatgtcttcgtgccgcccaaggcgccgccagccggtttgatg
cgccaagccgcacaaacctgcgcgctggtgtgggatgacatcggcgacaccgatccgctg
gcactcgaccgcgtctcgcgttacttcgctcacctgtacggcaatgccaacacgctggac
atcggcgacgtctgcgatgcgctgcgtctgacagtggacacccaggcctggacgctgccg
gtgcgctttcgcgacgcggccgagaacttccgcctcatcgacaacgaagaggccgccacg
gtcatcgtgcgctaccgcagcccgcgctgccgcgacaacgtcgaccagctgatcgcgatg
ctcgaacgcgacggaccgcagcgctggctgatgcgcaagctgcagcgttacggcgtgacg
atctatcgccatgccctgcagcgcctgctggcctgtggcgacatcagcgaactggccggt
gtgcccggtctctacgtgcagaccgaatccgatgtgttctacgacccggtgctcggcgtc
caggtcggcggcgctccgggtgacccggctgcctttgtgttttga

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