Leptothrix cholodnii: Lcho_1250
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Entry
Lcho_1250 CDS
T00681
Name
(GenBank) deoxyribodipyrimidine photolyase-related protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
lch
Leptothrix cholodnii
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_1250
Enzymes [BR:
lch01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
Lcho_1250
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
Lcho_1250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
Motif
Other DBs
NCBI-ProteinID:
ACB33519
UniProt:
B1Y5D1
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All DBs
Position
complement(1338459..1340000)
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AA seq
513 aa
AA seq
DB search
MAELRNLVLVLGDQLDLEAAAFDGFDAAHDAVWMAEVAEESTHVWSSKPRSVMFLAAMRH
FAQALRAAGRPLHPMRLDDPTNQGSLAAQLQADIERLRPARLVMTAPGDWRVLQAIKDVA
QAHGLPLEIREDRHFYGSVREFAAHARGRKSLRMEYFYREMRKRHGVLMQGEQPEGGQWN
FDADNREAFGAAGPGSVPPRAVFEPDAMTREVIALVEARLADHPGRLDDFAWPVSREQAL
VALQRFVTERLPLFGRYQDAMWPGEPWLHHAHLSAALNLKLLNPREVVDAAVAAYRAGAA
PLASVEGFVRQILGWREYVRGIYWTRMPGYAELNTLDAQEDLPAWYWTGATDMACLRDAI
GQTLQHGYAHHIQRLMVTGLFALMYGVQPQQVHAWYLAVYVDAVEWVELPNTLGMSQYAD
GGLMASKPYVATGKYIQRMSPYCKGCRYDPAQRSGDAACPFTTLYWDFLMKHEAALAGNP
RMALQVKNVARLNDGQKQAIRERASAIRRGEVR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
gtggctgagttgcgcaatctcgttctcgtgctgggcgatcagctcgacctggaagccgcc
gcgttcgacggtttcgacgccgcacacgacgcggtctggatggccgaggtggccgaggaa
tcgacccatgtgtggtcgagcaagccacgcagcgtgatgttcctggccgcgatgcgccac
ttcgcgcaggcgctgcgtgccgccggccggcccttgcaccccatgcggctggacgacccg
accaaccaaggcagcctggccgcgcaactgcaggccgacatcgagcgcctgcgcccggcc
cggctggtgatgactgcaccgggcgactggcgcgtgctgcaggcgatcaaggatgtggcg
caggcacacggcctgccgctggagatccgcgaggaccgccatttctatggcagcgtgcgc
gagttcgcggcgcatgcgcgcggccgcaagtcgctgcgcatggaatatttctatcgcgaa
atgcgcaagcgccacggcgtgctgatgcaaggcgagcagcccgaaggcggccagtggaac
ttcgacgccgacaaccgcgaggcgtttggcgccgccggtccgggcagcgtgccaccgcgg
gcggtgttcgagcccgatgccatgacacgcgaggtgatcgcgctggtcgaggcgcgcttg
gccgaccaccccggccggctggacgacttcgcctggccggtgtcgcgcgaacaggcgctc
gtcgcgctgcagcgtttcgtcaccgagcgcctgccgctgttcggccgctaccaggacgcg
atgtggcccggcgagccctggctgcatcacgcgcacctgtcggcggcactgaacctgaag
ctgctgaacccgcgcgaggtggtcgacgcggccgtcgccgcctaccgcgcgggcgcggcg
ccgctggccagcgtggaaggtttcgtgcgccagatcctgggctggcgcgagtacgtgcgc
ggcatctactggacccgaatgcccggctacgccgagctcaacacgctggacgcacaggaa
gacctgccggcctggtactggaccggcgccaccgacatggcctgcctgcgcgatgcgatc
gggcagacgctgcagcacggctacgcccaccacatccagcgcctgatggtcaccggcctg
ttcgcgctgatgtacggcgtgcagccgcagcaggtgcatgcctggtatctggcggtctac
gtcgatgcggtcgaatgggtcgagctgcccaacacgctgggcatgagccagtacgccgac
ggcggcctgatggccagcaagccctacgtggccaccggcaagtacatccagcgcatgagc
ccctactgcaagggctgccgctacgaccccgcgcagcgcagcggcgacgcggcctgcccg
ttcaccacgctgtactgggacttcctgatgaagcacgaggccgcgctggccggcaatccg
cgcatggcgctgcaggtgaagaacgtggcgcgcctgaacgacggccagaagcaggcgatc
cgagaacgcgcgtctgcgatccgccgcggcgaggtgcgctga
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