Leptothrix cholodnii: Lcho_1776
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Entry
Lcho_1776 CDS
T00681
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Lcho_1776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_1776
Enzymes [BR:
lch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Lcho_1776
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Lcho_1776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ACB34043
UniProt:
B1XZ24
LinkDB
All DBs
Position
1912149..1916033
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AA seq
1294 aa
AA seq
DB search
MRDDSGSGPTPGLLILHGNRLELLLETVLQWLAAHPLAPLEEEVLLVQSNGIAEWLKMSL
AQRVGVCAATRVELPARFLWRCYRAMLGRAGAPARSPLDKGPLAWRLMRVLPALAGRPGF
EPLAQFLAGPGGPTPDAAPDLPRRLQLAQRLADLYDQYQVYRADWLIDWAAGRAVLTNPC
TGAAPVALDAEQRWQALLWQALIRDLGTTDADQPADAPAESAALAVLAGTRPAVHARFVA
ALAQDEAPQRPLPRRVVLFGHSHLPAQTLEALAALAGHTQVILAVPNPCRFHWADMIDGR
ELLRSAHRRQPLRNGRDLGALDIADAHAEAHPLLAAWGRQGRDFLRLLDAFEEQLGGAEA
GALRGELPRVDLFDDEPGDTLLAQVQARIRDAVPLAEHAALNGPPLDAAAARQRAATDRS
IEFHLCHSAMREVEVLHDQLLARLAAAKGSLAPRDIVVMVPDVEVYAPLVRAVFGQYPAS
DARHIPYDIADLRPRGHHPLLLALEWLLRITEQRCTASELRELIDVAALANRFGLEGDDL
PTLGRWLDGAGVRWGLDAEHRASLDLAACGEANTWAFGLRRMLLGYAVGDDPAATPGEPW
HGIAPYAEVGGLEASIAGALAELVEALQRWWREARTAATPADWDARARALLAAFFRPATE
DERLLLAALHDALAQWREACDEAGYAEAVPLAVLREAWLGTVDEPGLRSRFLAGGVTFCT
LMPMRAIPFQGVCLLGMNEGDYPRRGVRSDFDLLAAPGQRRPGDRARRDDDRMLMLEALL
SARAQLHVSWIGRSVRDNTAQPPSVLVAQLRDYLAAGWGRPLVDALSVEHPLQPFSRRYF
EQTVEQGEPVDGPADETGDETGNDTAALRRGLLTYAREWRAAHAREDAAAAASDPLTAAP
TPIDRRPAPADQPPLKLAMLTRFLRNPVADHLNERLGVRLALADEALADDEPLGLHALDE
SILLRRLVEQGDVQTAQLPASAPAADPESDADAARLQRALQDGSLSLQRQGILPLAGLGE
RWQQAFVRQSLPMLAQWRIWQEAAPERAAPQPLNLALPLADGGALQIDDWLDGLQIEATT
GALLWLDLQASRLCAKPGKKDQGKGKAGPVRPDKLYRAWLVMLAAGAAGIALTGRIVGRD
VTLELSPPPAEVARAALADLTGAWWASWRAPLAIAPRSALAALAEAPVLADADPSGPRPW
PLDAWIAAERTYDGGTFTRRVPPESDEPSLARVFADWEALGARADEFQHWAERLYRPLRA
WALNTERVKAQPLPQAVLLDDDAQDDERDDGEDA
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgacgattcgggctccgggcccaccccaggcctgctgatcctgcacggcaaccgc
ctcgagctgctgctcgagaccgtcctccagtggctcgccgcccacccgctggcgccgctc
gaagaagaggtgctgctggtgcagagcaacggcatcgccgagtggctgaagatgtcgctg
gcgcagcgcgtgggcgtctgcgccgccacccgggtcgagctgccggcgcgcttcctgtgg
cgctgctaccgcgcgatgctcggccgagccggcgcgccggcccgctcgccgctcgacaag
gggccgctcgcctggcgcctgatgcgcgtgctgcccgcactggccgggcggccgggcttc
gagccgctggcgcagttcctggccgggccgggcgggccgacgccggatgccgcccccgac
ctgccgcgccgcctgcagctcgcgcagcggctggccgacctctacgaccagtaccaggtc
taccgggccgactggctgatcgactgggccgccggccgtgccgtgctcaccaacccctgc
accggcgcggcgccggtggcgctcgatgccgagcagcgctggcaggcgctgctgtggcag
gcgctgatccgtgacctcggcacgaccgacgccgatcagcccgccgacgcaccggccgag
tccgctgccctggccgtgctggccggcacccgcccggccgtgcacgcccgcttcgtcgcc
gcgctcgcgcaggacgaggcgccgcagcgaccgctgccgcgccgcgtcgtgctgttcggc
cacagccacctgccggcacagacgctcgaggcactggccgccctggccggccacacccag
gtgatcctggcggtgcccaacccctgccggttccactgggccgacatgatcgacggccgc
gagctgctgcgcagcgcgcaccgccgccagccgctgcgcaacggccgcgacctgggcgcg
ctcgacatcgccgacgcccacgccgaggcccatccgctgctcgccgcctggggccggcag
gggcgcgatttcctgcgcctgctcgatgccttcgaggaacagctcggcggcgccgaggcc
ggtgccctgcgcggcgagctgccgcgggtcgacctgttcgacgacgaacccggcgacacg
ctgctcgcgcaggtacaggcgcgcatccgcgacgccgtgccgctggccgaacacgccgcg
ctgaacggcccgccgctcgatgccgccgccgcccgccagcgcgccgcgaccgaccgctcg
atcgaattccacctctgccacagcgcgatgcgcgaggtcgaggtactgcacgaccagctg
ctggcgcgcctggccgcggccaagggctcgctggcgccgcgcgacatcgtcgtgatggtg
cccgacgtcgaggtctacgcgccgctggtgcgcgccgtgttcggccagtacccggccagc
gacgcccgccacatcccgtacgacatcgccgacctgcgcccgcgcggccatcacccgctg
ctgctggcgctcgaatggctgctgcgcatcaccgagcagcgctgcaccgccagcgagctg
cgcgagctgatcgacgtggcggcgctggcgaaccgtttcggcctcgaaggcgacgacctg
cccacgctcggccgctggctcgacggcgccggcgtgcgctggggactcgacgccgaacac
cgcgccagcctcgacctggccgcctgcggcgaggccaacacctgggcgttcggcctgcgc
cgcatgctgctcggttatgcggtcggcgacgacccggccgccacgcccggtgagccgtgg
cacggcatcgcgccgtatgcggaggtcggcggcctcgaggcctcgatcgccggtgcgctg
gccgagctggtcgaggcgctgcaacgctggtggcgcgaggcccgcaccgccgccacgccg
gctgattgggacgcccgcgcccgcgcgctgctggctgccttcttccgccccgccaccgaa
gacgagcgcctgctgctcgcggccctgcacgacgcgctggcgcaatggcgcgaggcctgc
gacgaagccggctacgccgaagccgtgccgctggcggtgctgcgcgaggcctggctcggc
acggtcgacgagcccggcctgcgcagccgcttcctggccggcggcgtcaccttctgcacc
ctgatgccgatgcgcgcgatcccgttccagggcgtctgcctgctcggcatgaacgagggc
gactatccgcgccgcggcgtgcgcagcgatttcgacctgctcgccgcgcccggccagcgc
cgccccggcgaccgcgcccgccgcgacgacgaccgcatgctgatgctcgaggcgctgctg
agcgcgcgcgcgcagctgcacgtcagctggatcggccgcagcgtgcgcgacaacaccgcg
cagccgccctcggtgctggtggcgcagctgcgcgactacctcgccgccggctggggccgt
ccgctggtggacgcgctgagcgtcgaacacccgctgcagccgttcagccggcggtatttc
gagcagaccgtcgagcagggcgagccggtcgacggccccgccgacgaaacgggcgacgaa
acgggcaacgacaccgccgccctgcgccgcggcctgctgacctacgcccgcgagtggcgc
gccgcccatgcgcgcgaagacgctgccgctgcggcgtccgaccccctgacagccgcgccg
accccgatcgaccgccgtcccgcaccggccgaccagccgccgctcaagctcgcgatgctg
acgcgcttcctgcgcaacccggtcgccgatcacctgaacgagcgcctcggcgtgcgcctg
gcgctggccgacgaggccctggccgacgacgagccgctgggcctgcacgcgctcgacgag
agcatcctgctgcgccggctggtcgagcagggcgacgtgcagacggcgcagttgccagcc
agcgcgcccgcagccgatcccgagtcggacgccgatgccgcgcggctgcagcgcgcgctg
caggacggcagcctgtcgctgcagcgccagggcatcctgccgctggccgggctgggcgag
cgctggcagcaggccttcgtgcgccagagcctgccgatgctggcgcagtggcggatctgg
caggaggctgcgcccgaacgcgccgcgccgcagccgctcaacctggccctgccgctcgcc
gacggcggcgcactgcagatcgacgactggctcgacggcctgcagatcgaggccaccacc
ggcgctctgctgtggctcgacctgcaggccagccggctgtgtgccaaaccgggcaagaag
gatcagggcaagggcaaggccggcccggtgcggcccgacaagctctaccgcgcctggctg
gtgatgctggcggcgggtgcggctggcatcgcgctgaccggccgcatcgtcggccgtgac
gtcacgctggaactgagcccgccgccggccgaagtggcccgcgccgcgctggccgacctg
accggcgcctggtgggccagctggcgcgcgccgctggcgatcgcgcccaggtcggcgctg
gcggcgctggccgaggcgccggtgctggccgacgccgatccgtccgggccacgcccctgg
ccgctcgacgcctggatcgcagccgagcgcacctacgacggcggcaccttcacccgccgc
gtgccgcccgaatccgacgagccgtcgctggcccgcgtcttcgccgactgggaggcgctc
ggtgcccgcgccgacgagttccagcactgggccgagcgcctctaccgcccgctgcgcgcg
tgggcgctgaacaccgagcgggtgaaggcgcagccgctgccgcaggcggtgctgctcgac
gacgacgcccaggacgacgaacgcgacgacggcgaggacgcctga
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