Leptothrix cholodnii: Lcho_1959
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Entry
Lcho_1959 CDS
T00681
Name
(GenBank) conserved hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03420
Nucleotide excision repair
lch03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lcho_1959
03430 Mismatch repair
Lcho_1959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_1959
Enzymes [BR:
lch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Lcho_1959
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Lcho_1959
MMR (mismatch excision repair)
Other MMR factors
Lcho_1959
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
Viral_helicase1
AAA_19
AAA_30
UvrD_C_2
Motif
Other DBs
NCBI-ProteinID:
ACB34226
UniProt:
B1Y1C7
LinkDB
All DBs
Position
complement(2123271..2124302)
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AA seq
343 aa
AA seq
DB search
MDKRVVFAVAGSGKTTSLIAALDEVRRFLLVTYTDANHDNLRAKVIERFGYVPPNIAIYT
YFSFLHSFCYRPFLRSKKGTRGITFSTPERFPNYPLTNDRRYMTAGRWLYANRLAKFIEQ
CGLHGAVVARMEKYFDVFLVDEVQDFGGHDFNFLMAISEARLDMTFVGDFHQHTFDTSRD
GNVNASLHADYGAYKKKFERARLNVDTDSLKRSRRCSKSVCDFITQMIGIEIESHDERAS
VVRFEDDPTAVAALFEDPATVKLFYKEHYKYGCFSQNWGASKGMDSYGDVCVALNPGNVK
AWQASSFRTINPETRNKLYVACSRARGKLTFVPESLLKACRRS
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atggataagcgcgtagttttcgcggttgccggctcgggcaagaccaccagcctgattgcc
gcgctggacgaggtgcggcgcttcctgctggtcacctacaccgacgccaatcacgacaac
ctgcgggccaaggtcatcgagcgcttcggctacgtgccgcccaacatcgcgatctacact
tacttcagcttcctgcatagcttttgctaccggccgttcctgcgatccaagaagggcacg
cggggcatcaccttcagcacgccagagcggtttccgaactaccccctgaccaatgaccgg
cgctacatgacggctggccgctggctgtatgccaaccggctcgccaagttcatcgagcaa
tgcggcctgcacggcgccgtggtggcgcggatggagaagtacttcgatgtgttcctcgtg
gacgaggtccaggacttcggagggcacgacttcaacttcctgatggccatcagcgaggct
cgcttggacatgacctttgtcggcgacttccaccagcacacgttcgacacgagtcgtgac
ggcaacgtcaacgcaagccttcacgccgactacggcgcctacaagaagaagttcgagcgg
gctcggctgaacgtcgacaccgacagcctcaagcggagccgccggtgcagcaagagcgtc
tgtgacttcatcacgcagatgatcggcatcgagatcgagtcgcatgacgagcgggccagc
gtggtgcgattcgaagacgatccaaccgcagtggccgctctcttcgaagatccggcgaca
gtcaagctgttctacaaggagcactacaagtacggctgcttctcgcagaactggggcgct
tcgaagggcatggacagctacggagatgtgtgtgtagccctgaatccagggaacgtgaag
gcgtggcaagccagcagcttccgcacaatcaacccggagacacgcaacaagctgtacgtt
gcctgttcccgggcgaggggcaagctcaccttcgtccccgagtcactgctgaaggcctgc
aggcgctcctga
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