Leptothrix cholodnii: Lcho_2226
Help
Entry
Lcho_2226 CDS
T00681
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lch
Leptothrix cholodnii
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lch03019
]
Lcho_2226
Enzymes [BR:
lch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Lcho_2226
Messenger RNA biogenesis [BR:
lch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Lcho_2226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_22
HA2_N
nSTAND3
NACHT
AAA_19
T2SSE
AAA_25
SRP54
AAA_30
PhoH
TsaE
Motif
Other DBs
NCBI-ProteinID:
ACB34492
UniProt:
B1Y3G4
LinkDB
All DBs
Position
complement(2428734..2432789)
Genome browser
AA seq
1351 aa
AA seq
DB search
MDNPAPVNPPIAEAGGIESRSPARRPARPPRPATPIPPITYPESLPVSARREEIAQALRD
HQVVIVCGETGSGKTTQLPKIALELGRGWGAGGSGLIGHTQPRRIAASSVAKRIADELKS
PLGEVVGYKVRFQDRLQAGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDF
LLGYLRQILPRRPDLKIVVTSATIDADRFAQHFASAKGPAPVLMVSGRLFPVEQRYKPFE
ESREYDLNTAIADAVDELWRGMAGGDILVFLPGEREIREAADHLRKHLAHQPLHRNAQIL
PLFARLSQQEQDQVFETGRQQRIVLATNVAETSLTVPGIRYVIDSGLARVKRYSYRSKVE
QLQIEPISQAAANQRAGRCGRVANGICIRLYDEKDFTGRPRFTDPEILRSSLAGVILRMK
SLHLGLIDDFPFLEPPPRKAIADGYALLGELNAVDDANELTPIGRELAKLPLDPRVGRMI
LEARDRQALDEVLIIASALSVQDVRDRPMEAAQAADEKHKKFDDEKSEFTGYLKLWRWIE
EGRGHAEALPTAGPRPTATGRKPGPPETRPAQAQNAAHKLSNRQQEQRLRDSFVSPRRVR
EWRDIHSQLHTVVAEHGWRLNTAPASYEQLHLSMLAGLLGNVGLKSEDEDWYLGARGIKF
YRHPGAHLSKKPGRWLVAAELVETTRLFGRGLAAIEPQWIPQIAGHLLKTQLLEPHWEKK
AAEVIALERATLYGIVIYSNRRVNYGLVDPKVAREIFIREALVNGEWESKLPFLAHNARM
IRQVEELEHKSRRQDVLVDDELIHAYYDQQLPAEIVSGASFERWYRAEQKKQPTLLHLTR
DELMRHEAAGITTSAFPKTIRLGGVDCAATYLHEPGDAKDGVTVTVPIYVLNQVNEDPCD
WLVPGMIEAKVLALVKTLHQRPRSRLVPLPDYVAEFLELAPFGQGNLLDVLLKAVRERTQ
IAVQRNDFKPEQLAPHLFMNFRVVDEHGRQLGMGRHLAALKAELGGQARSAFQALAAIKL
SAGVNAAASGAASAHAAPDRAASGSTAAPSGPRRVSGQPEAPAAALAAPPAIYTAWTFGE
LPELMEIRKAGQTLVGFPALIDRGTHVEIEVFDEPEAAAAKHRAGLRRLVALQIKEPLKY
LEKNIPDLTKMAVAFMPLGSMEELRTQIIDVALDRAFLAEPLPTDALAFKGRIDEGRTRL
NLIAQEVARIAGVVLIEFAAAARKLKDSRAPKDVADDITGQLQRLVPRLFIVSTPWAQLQ
HLPRYLKAITQRLDKYRADPARDAQRLAELRPLEQRYIRRLAERKGAADARLDEYRWLLE
ELRVSLFAQELRTPQPVSAKRLDKVWSQLSS
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
gtggataatccagcccccgtgaacccacctatcgccgaagctggcggcatcgaatcgcgc
agccccgctcgccggcccgcccggccaccccggccggccacgccgatcccgcccatcacc
taccccgaatcgctgccggtctccgcccggcgcgaggagatcgcgcaggccctgcgcgat
caccaggtcgtcatcgtctgcggcgagaccggctcgggcaagaccacccagctgcccaag
atcgcgctcgaactcggccgcggctggggtgccggtggcagcggcctgatcggccacacc
cagccgcggcggattgccgccagctcggtggccaagcgcatcgccgacgagctgaaatcg
ccgctgggcgaggtggtcggctacaaggtgcgcttccaggaccgcctgcaggccggcgcc
agcgtcaagctgatgaccgacggcatcctgctggccgagacgcagaccgatccgctgctc
aaggcctacgacacgctgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttc
ctgctcggctacctgcgccagatcctgccgcgccggccggacctgaagatcgtcgtcacc
tcggccacgatcgacgcggatcgcttcgcgcagcacttcgccagcgccaagggcccggcg
cccgtattgatggtcagcggccggctgttcccggtcgagcagcgctacaagccgttcgag
gaaagccgcgaatacgacctgaacacggccatcgccgacgcggtcgacgaactctggcgc
ggcatggcgggcggcgacatcctggtgttcctgcccggcgagcgcgagatccgcgaggcc
gccgaccacctgcgcaagcacctggcgcaccagccgctgcaccgcaacgcgcagatcctg
ccgctgttcgcgcgcctgtcgcagcaggagcaggaccaggtcttcgagaccggccgccag
cagcgcatcgtgctggccaccaacgtggccgagacctcgctgaccgtgcccggcatccgc
tacgtgatcgactcgggtctggcgcgggtcaagcgctacagctaccgcagcaaggtcgag
cagctgcagatcgagccgatcagccaggccgcggccaaccagcgcgcgggccgctgcggg
cgggtggccaacggcatctgcatccggctctacgacgagaaggacttcaccggccggcca
cgtttcaccgaccccgagatcctgcgctcgtcgctggccggcgtgatcctgcgcatgaag
tcgctgcacctcggtctgatcgacgacttccccttcctcgagccgccgccgcgcaaggcg
atcgccgacggctacgcgctgctgggcgagctcaacgcggtcgacgacgccaacgagctg
acccccatcggccgcgaactggccaagctgccgctcgatccgcgcgtcggccgcatgatc
ctggaggcgcgtgaccgccaggcgctcgacgaggtgctgatcatcgccagcgcgctcagc
gtgcaggacgtgcgcgaccgcccgatggaagccgcgcaggcggctgacgaaaaacacaag
aagttcgacgacgagaagtcggagttcaccggctacctcaagctctggcgctggatcgag
gaagggcgcggccatgccgaggcgctgccgacggccggtccgcgtccgaccgccaccggc
cgcaaacccggcccgcccgagacccgcccggcccaggcccagaacgctgcacacaagctc
agcaaccgccagcaggaacagcgcctgcgcgacagcttcgtcagcccgcgccgggtgcgc
gagtggcgcgacatccacagccagctgcacacggtggtggccgaacacggttggcggctc
aacaccgcgccggccagctacgagcagctgcacctgtcgatgctcgccggcctgctcggc
aacgtcggcctgaagagcgaagacgaggactggtacctcggcgcacgcggcatcaagttc
taccgtcatcccggcgcacacctgagcaagaaacccggccgctggctggtggcggccgag
ctggtcgagaccacccggctgttcggccgcgggctggcggcgatcgagccgcagtggatc
ccgcagatcgccggccacctgctgaagacgcagctgctggagccgcactgggagaagaag
gccgccgaggtgatcgcgctcgagcgcgccacgctctacggcatcgtgatctacagcaac
cggcgggtgaactacggcctggtcgacccgaaggtggcacgcgagatcttcatccgcgag
gcactggtcaacggcgagtgggaatcgaagctgccgttcctggcccacaacgccaggatg
atccgccaggtcgaggaactcgagcacaagtcgcgccgccaggacgtgctggtcgacgac
gagctgatccacgcctattacgaccagcagctgccggccgagatcgtcagcggcgcgagc
ttcgagcgctggtaccgcgccgagcagaagaagcagcccacgctgctgcacctgacacgc
gacgagctgatgcgccacgaggccgcgggcatcacgacgtcggccttcccgaagacgatc
cggctgggcggcgtggattgcgcagccacctacctgcacgaacccggcgacgccaaggac
ggtgtcacggtgaccgtgccgatctacgtgctcaaccaggtcaacgaagacccttgcgac
tggctggtgcccggcatgatcgaggccaaggtgctggcgctggtcaagacgctgcaccag
cggccgcgctcgcggctggtgccgctgccggactacgtggccgagttcctggagctggcg
ccgttcggccagggcaacctgctcgacgtgctgctcaaggcggtgcgcgaacgcacccag
atcgccgtgcagcgcaacgacttcaagcccgagcagctggcgccgcatctgttcatgaac
ttccgggtggtcgacgagcacggccgccagctcggcatggggcggcacctcgccgcgctc
aaggccgagctgggcgggcaggcgcggtcggccttccaggcgctggcggcgatcaagctc
agtgccggcgtgaacgcggccgccagtggcgccgcctccgcccatgcggcgcccgatcga
gcggcgagcgggagcaccgcggccccatccggcccgcgccgcgtcagcggccaacccgaa
gcgccggccgcggcgctggccgcgccgcctgcgatctacaccgcctggaccttcggcgag
ctgcccgaactgatggagatccgcaaggccggccagacgctggtgggtttcccggcgctg
atcgaccgcggcacgcatgtcgagatcgaggtcttcgacgagcccgaagcggccgccgcc
aagcaccgcgccggcctgcgccggctggtcgccttgcagatcaaggagccgctgaagtac
ctggaaaagaacatcccggacctgacgaagatggcggtcgccttcatgccgctgggctcg
atggaagaactgcgcacgcagatcatcgacgtcgcgctcgaccgcgccttcctggccgag
ccgctgccgaccgacgcgctcgccttcaagggtcgcatcgacgagggccgcacgcgcctg
aacctgatcgcgcaggaggtggcgcgcatcgccggggtggtgctgatcgagtttgccgcg
gccgcccgcaagctcaaggacagccgggcgcccaaggacgtcgccgacgacatcaccggg
caactgcagcggctggtgcccaggctgttcatcgtgtcgacaccgtgggcgcagctgcag
cacctgccacggtatttgaaggcgatcacgcagcggctcgacaagtaccgcgccgatccg
gcccgcgatgcgcagcgcctggccgagctgcgcccgctcgagcagcgctacatccgccgc
ctggccgagcgcaagggcgcggccgatgcgcggctggacgaataccgctggctgctcgaa
gaactgcgcgtgagcctgttcgcgcaggagctgcgcacgccgcagccggtcagcgccaag
cggctcgacaaggtctggagccagctcagcagctga
DBGET
integrated database retrieval system
