Leptothrix cholodnii: Lcho_2503
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Entry
Lcho_2503 CDS
T00681
Name
(GenBank) Exonuclease RNase T and DNA polymerase III
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03030
DNA replication
lch03430
Mismatch repair
lch03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Lcho_2503
03430 Mismatch repair
Lcho_2503
03440 Homologous recombination
Lcho_2503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lch03032
]
Lcho_2503
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_2503
Enzymes [BR:
lch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Lcho_2503
DNA replication proteins [BR:
lch03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Lcho_2503
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Lcho_2503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
ACB34768
UniProt:
B1Y6D2
LinkDB
All DBs
Position
complement(2727805..2728461)
Genome browser
AA seq
218 aa
AA seq
DB search
MKLADLSPAQALAALKREWLLYHLGDQRLRFMWDEPPPDEWVALDCETTGLDVGRDEIIA
IGAVRIVGNRIMTSERLELLVRPEKRKLSADSVRVHRLREQDVAQGLKPEEAVMQLMHFI
GSRPLVGYYLEFDLAMINRVAWPMLGMGLPQPRIEVSSLYHDYKHRQLLPYQQQSVNIDL
RFDTLMKDLDLPQRDAHDALNDAVMAALAYLKLRRLLA
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctcgccgacctgtcgcccgcacaggcgctggctgcgctcaagcgcgaatggctg
ctctaccacctgggcgaccagcgcctgcgtttcatgtgggacgagccgccgcccgacgag
tgggtggcgctcgactgcgagaccaccggcctggacgtcggccgcgacgagatcatcgcc
atcggcgcggtgcgcatcgtcggcaaccgcatcatgaccagcgagcgcctggagctgctg
gtgcggcccgaaaagcgcaagctctcggccgacagcgtgcgggtgcaccgcctgcgcgag
caggacgtcgcccagggcctcaagcccgaggaggcggtgatgcagctgatgcacttcatc
ggcagccggccgctggtgggctactacctcgagttcgatctggcgatgatcaaccgcgtg
gcctggccgatgctcggcatgggcctgccgcagcccaggatcgaggtctcgtcgctctac
cacgactacaagcaccgccagctgctgccgtaccagcagcagtcggtcaacatcgacctg
cggttcgacaccctgatgaaggacctcgatctgccgcagcgcgatgcgcacgatgcgctc
aacgatgcggtgatggcggcgctggcctacctcaagctgcgccgcctgctggcctag
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