Leptothrix cholodnii: Lcho_2806
Help
Entry
Lcho_2806 CDS
T00681
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lch
Leptothrix cholodnii
Pathway
lch03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lcho_2806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lch03021
]
Lcho_2806
03019 Messenger RNA biogenesis [BR:
lch03019
]
Lcho_2806
Transcription machinery [BR:
lch03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Lcho_2806
Messenger RNA biogenesis [BR:
lch03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Lcho_2806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACB35071
UniProt:
B1XXF1
LinkDB
All DBs
Position
3090832..3092094
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKAQHISALVQMAETLEIENASRLRKQELMFAIMKKRARQGEQIFGDGVLEVLPD
GFGFLRSLDASFLASTDDIYLSPSQIRRFNLHTGDMIEGEVRVPKDGERYFALVKVDRVN
ELTPEESKNKIMFENLTPLFPKEQFRLERDVKNEENITSRIIDLIAPIGKGQRALLVAPP
KSGKTVMMQHFAHALIANHPDVHLIVLLVDERPEEVTEMQRTVRGEVISSTFDEPAARHV
QVAEMVIERAKRLVELRKDVVILLDSITRLARAYNNVLPSSGKVLTGGVDAGALQRPKRF
FGAARNVEEGGSLTIIGTALIDTGSRMDEVIYEEFKGTGNCEIHLDRRMAEKRVYPSILL
NKSGTRREELLLKPEILQKTWILRKLLYPMDEIEAMEFILDKMKATKSNIDFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacctttccgaactcaaggcccaacacatctcggcgctggtccagatggccgagacg
cttgagatcgaaaacgccagccgcctgcgcaagcaggagttgatgtttgcgatcatgaaa
aagcgcgcccggcaaggcgaacaaatcttcggcgacggcgtgctggaagtgctgccggac
ggcttcggtttcctgcgctccctcgacgcgagtttcctggccagcaccgacgacatctac
ctgtcgccgagccagatccgacgtttcaacctgcacaccggcgacatgatcgaaggtgaa
gtgcgggtacccaaggacggcgaacgctacttcgcgctggtgaaagttgaccgagtcaac
gaactgacgccggaggagagcaagaacaagatcatgttcgagaacctcacgccgctgttc
cccaaggagcagttccggcttgagcgcgacgtcaagaacgaagaaaacatcaccagccgc
atcatcgacctgatcgcgccgatcggcaaaggtcagcgagcgctgctggtggcgccgccc
aagagcggcaagacggtcatgatgcagcacttcgcacatgccctgatcgccaaccatccc
gacgtgcacctgatcgtgctgctggtcgacgagcggcccgaagaagtgaccgagatgcag
cgcaccgtgcgcggcgaggtcatcagttcgaccttcgacgaacccgccgcacgccacgtg
caggtggctgaaatggtgatcgaacgcgccaagcggctggtcgaactgcgcaaggatgtc
gtcatcctgctcgactcgatcacccgactggcccgtgcctacaacaacgtgctgccctcg
tcgggcaaggttctgaccggcggcgtcgacgccggcgcgcttcagcgtccgaagcgcttc
ttcggcgcggcccgcaatgtcgaggaaggcggttcgctgaccatcatcggcaccgccctg
atcgacaccggcagccgcatggacgaggtgatctacgaagagttcaagggcaccggcaac
tgcgagatccacctggatcggcgcatggccgagaagcgtgtctacccgtcgatcctgctc
aacaagtcgggcacccgtcgcgaggaactgctgctcaagccggagatcctgcagaagacc
tggatcctgcgcaagctgctctatccgatggacgagatcgaggcgatggagttcatcctc
gacaagatgaaggccaccaagagcaacatcgacttcttcgacctgatgcgccgtggtggc
tga
DBGET
integrated database retrieval system
