Leptothrix cholodnii: Lcho_2998
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Entry
Lcho_2998 CDS
T00681
Name
(GenBank) type I secretion system ATPase
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
lch
Leptothrix cholodnii
Pathway
lch02010
ABC transporters
lch03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Lcho_2998
03070 Bacterial secretion system
Lcho_2998
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lch02000
]
Lcho_2998
02044 Secretion system [BR:
lch02044
]
Lcho_2998
Transporters [BR:
lch02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Lcho_2998
Secretion system [BR:
lch02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
Lcho_2998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
ABC_ATPase
AAA_29
AAA_16
AAA_21
AAA_22
NB-ARC
PRK
AAA_18
DUF87
Motif
Other DBs
NCBI-ProteinID:
ACB35260
UniProt:
B1XZ90
LinkDB
All DBs
Position
3304005..3306266
Genome browser
AA seq
753 aa
AA seq
DB search
MQPAQRHPDPDPAPVAPKPTVGHRADASGLPALCLLARLHHLGADAASLRHQLGKSPNEV
FTTDDLLVAAQHLGLKAKRLASSAERLPLVPLPALARLRIDTGDGSAVERWVLLAQCDGQ
RVLFQDAAAADGGRPTIEPLATFAAQWSGELIVASSRASVAGDLARFDFSWFIPSLVKHR
RLLGEVLLVSLFLQLFALVSPLFFQVVMDKVLVHRGLSTLNVLMVGLVVVVLFESLLTLL
RSYVFTHTTSRIDVELGARLFRHLLALPLSYFQARRVGDSVARVRELENIRSFLTGSALT
LVLDLLFSGVFIAVMLLYSVPLTLVVLASVPIYLGLSLSVVPLLRARLNEKFARGAENQA
LLVETLTGIQTVKASALEPALARRWDGQLAAYVSASLRTQTLANAAHEGVNLTAKLVNVA
TLWLGAQLVMDGALTVGMFVAFNMFAGRVAQPIMRLAQMWTDFQQTGIAMQRLGDILDTR
TEVPPSSAAQLPALQGRITLDGVSFRYRPDAPLVLQGLSLEIAPGEVIGIVGRSGSGKST
LTKLIQRLHVPEQGRVKVDGIDIALIDAAQLRRQVGVVLQENWLFNRSIRDNIAIADPGA
PLEAVLAVAQLAGAHEFISQLPEGYDTLVGEQGASLSGGQRQRIAIARALFGNPRILIFD
EATSALDYESEAILQRHMAMICRGRTVIIIAHRLSSVRGAHRIIAMDQGRIVEAGSHEVL
LRTDGLYAQLWRLQAGGPATGPATPAGQQEPRP
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgcagcccgcccagcgccatcccgatcccgatcccgcgcccgtcgcgccaaaacccacg
gtgggccaccgcgccgatgccagcggcctgccggccctgtgcctgctcgctcgcctgcac
cacctgggcgccgacgccgccagcctgcgtcaccagttgggcaagtcaccgaacgaggta
ttcaccaccgacgacctgctggtggcggcccagcacctgggcctcaaagccaagcgcctg
gccagcagcgccgagcgcctgccgctggtgccgctgccggcgctggcgcgcctgcgcatc
gacaccggtgacggctcagccgtcgaacgctgggtgctgctggcccagtgcgacggccag
cgtgtgctgttccaggatgccgctgcggccgacggcggccgccccacgatcgagccgctg
gccaccttcgccgcgcaatggagcggcgaactgatcgtcgccagcagccgcgccagcgtc
gccggtgatctcgccaggttcgacttcagctggttcatccccagcctggtcaagcaccgc
cgcctgctcggcgaagtgctgctggtgtcgctgttcctgcagctgtttgcgctggtctcg
ccgctgttcttccaggtcgtgatggacaaggtgctggtgcaccgggggctttccacgctc
aacgtgctgatggtcgggctggtggtcgtggtgctgttcgagagcctgctcacgctcttg
cgcagctacgtcttcacccacaccaccagccgcatcgacgtcgagctgggcgcgcggctg
ttccggcatctgctggcgctgcccttgtcttacttccaggcccgccgggtcggcgattcg
gtcgcgcgtgtcagggagctggaaaacatccgcagcttcctgaccggcagcgcgctgacg
ctcgtgctcgacctgctgttctcgggggtcttcatcgccgtgatgctgctctacagcgtg
ccgctgacgctggtcgtgctggccagcgtgccgatctacctgggcctgagcctgagcgtg
gtgccgctgctgcgcgcccgattgaacgagaagttcgcccgcggcgccgagaaccaggcg
ctgctggtcgagactctcaccggcatccagaccgtcaaggccagcgcgctcgaacccgcc
ctggcgcggcgctgggacggccagctcgccgcctacgtcagcgcgagcctgcgcacccag
accctggccaacgccgcgcacgaaggcgtcaacctcaccgccaagctcgtcaacgtggcc
acgctgtggctcggcgcccagctggtgatggacggcgcgctgacggtgggcatgttcgtc
gcgttcaacatgttcgccggccgggtggcgcagcccatcatgcgcctggcgcagatgtgg
accgacttccagcagaccggcattgcgatgcagcgcctgggcgacatcctcgacacccgc
accgaggtgccaccgagcagcgccgcgcaactgcccgcgctgcaaggccgcatcacgctc
gacggcgtgagcttccgctaccgccccgacgcgccgctggtactgcagggcctgagcctg
gagatcgcgcccggcgaggtgatcggcatcgtcgggcgctccggctcgggcaagagcacg
ctgaccaagctgatccagcgcctgcacgtgcccgaacagggccgcgtcaaggtcgacggc
atcgacatcgcgctgatcgacgccgcccagctgcgccgccaggtgggggtggtgctgcag
gagaactggctgttcaaccgcagtatccgcgacaacatcgccatcgccgaccccggcgcg
ccgctcgaggcggtgctggcggtggcgcagctggccggggcgcacgagttcatcagccag
ctgcccgaaggctacgacacgttggtgggtgaacaaggcgccagcctgtcgggcggccaa
cgccagcgcatcgccatcgcccgcgcgctgttcggcaacccgcgcatcctgatcttcgac
gaagccaccagcgcgctcgactacgagagcgaggcgatcctgcagcgccacatggcgatg
atctgccgcggccgcaccgtgatcatcattgcgcaccgcctgtcgagcgtgcgcggcgcg
caccgcatcatcgcgatggaccagggccgcatcgtcgaggccggcagccatgaggtgctg
ctgcgtactgacgggctgtatgcgcagctgtggcggctgcaggcgggcgggcccgcaaca
ggccccgccactcccgcaggccaacaggagccacggccatga
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