Leptothrix cholodnii: Lcho_3866
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Entry
Lcho_3866 CDS
T00681
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Lcho_3866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lch03021
]
Lcho_3866
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_3866
Enzymes [BR:
lch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Lcho_3866
Transcription machinery [BR:
lch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Lcho_3866
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Lcho_3866
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
TMF_DNA_bd
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ACB36120
UniProt:
B1Y7H2
LinkDB
All DBs
Position
complement(4334319..4338542)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMTEDDYDTKKREFGDEFVALM
GAEGIKQLLQEMDLDTEIDKLRNDMTGSELKVKKNSKRLKVMEAFKKSGIKPNWMVMDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPYLK
LHQCGLPKLMALELFKPFIFSRLEAMGIASTIKQAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSIEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRERTNGLGEGMIFSDVVEVQRALDNKVV
EITARISVRLTEWLRPEDGSDNFEPHTSLIHTTVGRALLSEILPKGLPFSVMNKALKKKE
ISRLINTAFRKCGLKATVVFADKLLQSGFRLATRAGISIAIDDMLVPKQKQMLIERAENE
VKEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMSQLSKQKVIDRNGKEVDQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTDNGMAMRALVEGGEVIESLRDRIL
GRVTAIDVTHPETQEVLVLAGKMLDEDTMEVLEAAGVDEVKVRTSLTCDTRFGICAKCYG
RDLGRGGLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVDAKSDGIIGF
NSTMRYVTNAKGELVVISRSGEIIITDPHGRERERHKVPYGAILNVKPDQTLKAGTILGN
WDPLTRPIITEFAGHTRFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGSAKVVRPQVKL
LDVNGQEVKIPGTDHSVTIGFPIGALIQVRDGQDVMPGEVLARIPVEGQKTRDITGGLPR
VAELFEARTPKDKGILAEVTGTVSFGKETKGKVRLQITDPEGKVYEELVPKEKNIVVHEG
QVVNKGESIIDGPADPQDILRLLGVEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQML
RRVQITNPGDSHYILGEQVERSELFGTNDKLRAQDKLPATYSDVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKAKDELDDNERR
LIAMQEAQEALAAVDADMADSAGNAAE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaagggactactcgaccttttcaagcagttcaccccggatgaacatttcgacgcgatc
aagatcgggcttgccagcccggagaagatccgttcgtggtcgttcggcgaggtgaagaag
cccgagaccatcaactaccggaccttcaagcccgaacgtgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtcacgcagaccaaggttcgccgtgac
cgcatgggtcacatcgacctggcggcgccgtgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgggtgctgtac
ttcgaagcgtacgtggtgaccgacccgggcatgactccgctgaagaagttcagcatcatg
accgaggacgactacgacaccaagaagcgcgaattcggcgacgagttcgtcgcactgatg
ggcgccgaaggcatcaagcagctgctgcaggagatggatctcgacaccgagatcgacaag
ctgcgcaacgacatgaccggcagcgagctgaaggtcaagaagaattccaagcgcctgaag
gtgatggaagccttcaagaagtcgggcatcaagcccaactggatggtcatggacgtgctg
ccggtgctgccgccggacctgcgcccgctggtgccgctggacggcggtcgtttcgcgacc
tccgacctgaacgacctgtatcgccgcgtcatcaaccgcaacaaccgcctggcgcggctg
ctcgagctgaaggcgcccgagatcatcgtgcgcaacgagaagcgcatgctgcaggaggcg
gtcgactcgctgctcgacaacggccgtcgcggcaaggcgatgaccggtgccaacaagcgt
gcgctgaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaacttg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcaccgtgggcccgtacctcaag
ctgcaccagtgcggcctgcccaagctgatggcgctggagctgttcaagcccttcatcttc
tcgcgcctcgaggcgatgggcatcgcgtccaccatcaagcaggccaagaaggaagtcgaa
tccggcacgccggtggtgtgggacatccttgaggaagtgatcaaggaacacccggtgatg
ctcaaccgcgcaccgaccctgcaccgcctgggcatccaggccttcgagccggtgctgatc
gaaggcaaggcgatccagctgcatccgctggtctgctcggccttcaacgccgacttcgac
ggcgaccagatggccgtgcacgtgccgctgtcgatcgaggcgcagatggaagcccgcacg
ctgatgctggcgtcgaacaacgtgctgttcccggcttcgggcgagccgtcgatcgtgccg
tcgcaggacgtggtgctgggtctgtactacgcgacccgcgagcgcaccaacggtctcggc
gaaggcatgatcttctccgacgtggtcgaagtgcagcgcgcactcgacaacaaggtggtc
gagatcaccgccaggatcagcgtgcgcctgaccgaatggctgcgccctgaagacggcagc
gacaacttcgagccgcacaccagcctgatccacaccacggtcggccgtgcgctgctgtcg
gagatcctgcccaagggcctgccgttcagcgtgatgaacaaggcgctgaagaagaaggag
atctcgcgcctgatcaacaccgccttccgcaagtgcggcctgaaggccacggtggtgttc
gccgacaagctgctgcagagcggcttccgtctcgccacgcgtgccggcatctcgatcgcg
atcgacgacatgctggtgcccaagcagaagcagatgctgatcgagcgggccgagaacgag
gtcaaggagatcgagcagcagtacgtctcgggtctggtgacggccggcgagcgctacaac
aaggtggtcgacatctggggcaagaccggcgacgaggtcggcaaggtcatgatgagccag
ctgtccaagcagaaggtcatcgaccgcaacggcaaggaagtggaccaggagtcgttcaac
tcgatctacatgatggccgactcgggcgcgcggggttctgccgcccagatccgccagctc
gccggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgccgatcacg
gcgaacttccgcgaaggcctgaacgttctgcagtacttcatctccacccacggcgcccgc
aagggcctggcggacacggcgctgaagaccgcgaactcgggttacctgacgcgtcgcctg
gtcgacgtgacgcaggacctggtcgtgatcgaggacgactgcggcaccgacaacggcatg
gcgatgcgtgcgctggtcgaaggtggcgaagtgatcgaatcgctgcgcgaccgcatcctc
ggccgtgtcaccgcgatcgacgtcacgcaccccgagacgcaggaagtgctcgtgctcgcc
ggcaagatgctcgacgaggacacgatggaagtgctcgaggcggcaggcgtcgacgaagtc
aaggtccgcacctcgctgacctgcgacacgcgtttcggcatctgcgccaagtgctacggc
cgtgacctcggccgtggcggcctggtcaaccagggcgaggcggtcggcgtgatcgccgcc
cagtcgatcggcgagccgggcacgcagctgacgatgcggaccttccacatcggcggcgcg
gcttcgcgcgcagcggtggcctcgagcgtcgacgccaagagcgacggcatcatcggcttc
aacagcacgatgcgctacgtcaccaacgccaagggcgagctggtggtgatttcgcgttcc
ggcgagatcatcatcaccgacccgcacggccgcgagcgtgagcgtcacaaggtgccgtac
ggcgcgatcctgaacgtcaagcccgaccagaccctcaaggccggcacgatcctgggcaac
tgggatccgctgacgcgtccgatcatcaccgagttcgccggccatacccgcttcgagaac
gtcgaagaaggcgtgaccgtggccaagcaggtcgacgaagtgaccggcctgtcgacgctg
gtggtcatcgacccgaagcgccgcggttcggccaaggtggtgcgtccgcaggtcaagctg
ctcgacgtcaacggccaggaagtcaagatccccggtaccgaccactcggtgacgatcggc
ttcccgatcggcgcgctgatccaggtgcgcgacggccaggacgtgatgcctggcgaagtg
ctggcgcgtatcccggtcgaaggccagaagacgcgtgacatcaccggcggtctgccgcgg
gtggccgagctgttcgaggcccgcacgcccaaggacaagggcatcctggccgaggtcacc
ggcacggtgtcgttcggcaaggagaccaagggcaaggtccggctgcagatcaccgatccg
gaaggcaaggtctacgaagagctggtgcccaaggaaaagaacatcgtggtgcacgaaggc
caggtggtcaacaagggcgagtcgatcatcgacggcccggccgatccgcaggacatcctg
cgtctgctgggggtcgaggaactggcgcgctacatcgtcgacgaagtgcaggacgtctat
cgcctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctg
cgccgcgtgcagatcaccaacccgggcgattcgcactacatcctgggcgagcaggtcgag
cggtccgagctgttcggcaccaacgacaagctgcgcgcgcaggacaagctgccggccacc
tactccgacgtgctgctgggcatcaccaaggcctctttgtcgaccgactcgttcatctcg
gcggcttccttccaggaaacgacccgggtgctcaccgaggcggccatcatgggcaagcgc
gacgagctgcgtggtctgaaggaaaacgtcatcgtcggccgtctgatcccggctggtacc
ggcatggcgtatcaccaggcgcgcaaggccaaggacgagctcgacgacaacgagcgtcgc
ctgatcgccatgcaggaggcgcaggaagcgctggctgccgtggatgccgacatggctgac
tccgcggggaacgcggcggagtaa
DBGET
integrated database retrieval system
