Leptothrix cholodnii: Lcho_3875
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Entry
Lcho_3875 CDS
T00681
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Lcho_3875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_3875
Enzymes [BR:
lch01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
Lcho_3875
DNA repair and recombination proteins [BR:
lch03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Lcho_3875
Prokaryotic type
Lcho_3875
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
DUF7810
Motif
Other DBs
NCBI-ProteinID:
ACB36129
UniProt:
B1Y7I1
LinkDB
All DBs
Position
complement(4348471..4349217)
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AA seq
248 aa
AA seq
DB search
MSALLLPPVCVPDNRLQAPLADAFRQVAPRWRGLCDRFLASEAGRSLCVEVDRRVAAGTP
VFPRQPLRALRALEPANVRVVILGQDPYHGAGEAEGLAFSVPEGVRIPPSLRNIHQELMT
DVGIARPGHGSLSRWVGQGVLLLNSSLSVDQDRAGSHARLGWRDFTDAVIAQVAADPSPK
VFMLWGAHAQAKRALINASGPAHLCLCSNHPSPLSARRPPVPFIGSAPFSRAAGWLASMG
RGAIDWHL
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcattgctgttaccgccggtctgcgtgcccgacaaccggttgcaggcgccgttg
gccgacgcgtttcgccaggttgcgcctcgttggcgcgggctgtgcgatcgattcctcgcc
agcgaggccggtcgctcgctgtgcgtcgaggtcgaccggcgtgtggctgccggcacgccg
gtttttcctcgccagccgttgcgtgcgctgagggcgctcgagcctgccaatgtccgggtc
gtgatcctcgggcaggatccgtaccacggcgccggcgaggccgaagggctggcgttttcg
gtccccgagggggtccggatcccgcccagcctgcgcaacatccaccaggaactgatgacc
gacgtcggcatcgcgcggccgggtcacggcagcctgtcccgctgggtcgggcagggcgtg
ctgttgctcaacagcagtctgagcgtcgaccaggaccgtgccggcagccacgcccgtctg
ggctggcgggacttcaccgacgccgtcatcgcgcaggttgccgccgatccgtcgcccaag
gttttcatgttgtggggtgcccatgctcaagccaagcgcgcgctgatcaacgccagcggc
ccggcgcatctgtgtttgtgctcgaaccatccatcgccgttgtcggcacgccgcccaccg
gtgccgttcatcggcagcgcccccttcagccgtgcggctggctggctggcgtcgatggga
cgaggcgcgattgattggcatttgtag
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integrated database retrieval system
