Leptothrix cholodnii: Lcho_3980
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Entry
Lcho_3980 CDS
T00681
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
lch
Leptothrix cholodnii
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lch03016
]
Lcho_3980
Enzymes [BR:
lch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Lcho_3980
Transfer RNA biogenesis [BR:
lch03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Lcho_3980
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
DUF6631
Motif
Other DBs
NCBI-ProteinID:
ACB36234
UniProt:
B1Y8G8
LinkDB
All DBs
Position
4466435..4468552
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AA seq
705 aa
AA seq
DB search
MAQNPPQHSAQHFALFDEAGKFLAGRVLSEAESSLQIELDSGKRAKVKAVNVMLRFDKPA
PAELIAEGQRLAEQIDLDLAWEFAPEEDFGFADFARDYFNASAGVTQQAAALFRLHGAPH
YFRRAGKGQFRKAPEEIVKAALLGIERKAQQAAQIEGWVGELVARTCPQPVREQLYKILF
KPDKNAPEYKAVVDAARRAQRAPLDLLLDAGAIDSPYQFHWRRFLFDQFPKGTNFPAGLA
APAIKDELPLAPVRAFSVDDSSTTEIDDALSVQGLGSGTVIFGVHIAAPALAVQPDSAVD
KVARDRFSTVYMPGWKLTMLPDEVVQSYTLMEGRDCPAVSLYVTFDEATLEVRGSETKIE
RVPIAANLRHDQLDAVVTEAALTGAAPAEFAFAPELSFAFRLARHLKAGREVVRGKPENF
NRPDYNFKLVDAEGLSIAELPAGHEKIVISERRRGAPLDTIVAEAMILANNTWGGWLAEL
GVPGIYRSQASMAPGIKVRMQTRPAPHAGMGVAHYTWATSPLRRYVDLVNQWQIIACARH
GRTAALVAPFKPKDTALLAIISGFDAAYSAYNGFQNGIERYWTLRWLEQNDVTEIDCSVM
KDGLVRADSLPLVLRAIGAEQMPRGAHVRVRLGRPDLLTLDIGGSVSTRLDDAACAEAVP
EDEGDDAAEAAPLALAIDLGDADAGADPGADAGTTAGADSVPAQG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcccagaaccctccacagcactcagcccagcatttcgccctgtttgacgaagccggc
aaattcctcgccggccgtgtcctgtccgaagccgaaagctcgctgcagatcgagctcgac
tcgggcaagcgggccaaggtcaaggccgtcaacgtgatgctgcgcttcgacaagcccgcg
ccggccgagctgatcgccgaaggccagcgcctggccgagcagatcgacctcgacctggcc
tgggaattcgcgcccgaagaggatttcggcttcgccgatttcgcgcgcgactatttcaac
gccagcgccggcgtgacgcagcaggccgcggcgctgtttcgcctgcacggcgcgccgcac
tacttccgccgcgccggcaagggccagttccgcaaggcgcccgaagagatcgtcaaagcc
gcgctgctgggcatcgagcgcaaggcccagcaggccgcgcagatcgagggctgggtcggc
gagctggtggccaggacctgcccgcagccggtgcgcgagcagctctacaagatcctcttc
aagcccgacaagaacgcgcccgaatacaaggcggtggtcgacgccgcccgccgcgcccag
cgcgcgccgctcgacctgctgctcgacgccggcgcgatcgacagcccctaccagttccac
tggcggcgcttcctgttcgaccagttccccaagggcacgaacttccccgccggcctggct
gcgccggccatcaaggacgagctgccgctggcgccggtgcgggcgttttcggtcgacgac
tcgtcgaccaccgagatcgacgacgcgctgtcggtgcagggcctgggcagcggcacggtg
atcttcggcgtgcacatcgccgcgcccgcgctggcggttcagcccgactcggccgtcgac
aaggtggcgcgcgaccgtttctcgaccgtctacatgccgggctggaagctgaccatgctg
cccgacgaggtggtgcagtcgtacacgctgatggaaggccgcgattgcccggccgtgtcg
ctgtacgtcaccttcgacgaggccacgctggaggtgcgcggcagcgagaccaagatcgag
cgcgtgccgatcgccgccaacctgcgccacgaccagctcgacgccgtcgtcaccgaagcc
gcgctgaccggtgcggcgccggccgagttcgccttcgcgcccgagctgagcttcgccttc
cggctggcccgtcacctgaaggccgggcgcgaggtggtgcgcggcaagccggagaacttc
aaccggccggactacaacttcaagctggtcgacgccgaggggctgtcgatcgccgagctg
ccggccggccatgaaaagatcgtgatcagcgaacgccgccgcggcgcgccgctcgacacc
atcgtcgccgaggccatgatcctggccaacaacacctggggcggctggctggccgagctg
ggcgtgccgggcatctaccgcagccaggccagcatggcgccgggcatcaaggtgcgcatg
cagacccggcccgcgccacacgccggcatgggcgtggcgcactacacctgggccacctcg
ccgctgcgccgctacgtcgacctggtcaaccaatggcagatcatcgcctgcgcccgccac
ggccgcaccgccgcgctggtggcgccgttcaagcccaaggacaccgcgctgctggcgatc
atcagcggcttcgacgccgcctactcggcctacaacggcttccagaacggcatcgagcgc
tactggacgctgcgctggctggagcagaacgacgtcaccgagatcgactgctcggtgatg
aaggacggcctggtgcgcgccgacagcctgccgctggtgctgcgcgccatcggcgccgag
cagatgccgcgcggcgcgcatgtgcgcgtgcggctgggccgccccgacctgctgacgctc
gacatcgggggcagcgtctcgacccgcctggatgatgcggcctgcgccgaagccgtgccc
gaggacgaaggcgacgacgccgccgaggccgcgccgctggcgctggcgatcgacctgggg
gacgcggatgcaggcgccgatccgggagccgacgccggcaccacggccggcgccgacagc
gtgcccgcccaaggctga
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