Leptothrix cholodnii: Lcho_4050
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Entry
Lcho_4050 CDS
T00681
Name
(GenBank) exodeoxyribonuclease III Xth
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
lch
Leptothrix cholodnii
Pathway
lch03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Lcho_4050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lch03400
]
Lcho_4050
Enzymes [BR:
lch01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
Lcho_4050
DNA repair and recombination proteins [BR:
lch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Lcho_4050
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF5648
Motif
Other DBs
NCBI-ProteinID:
ACB36302
UniProt:
B1XWV3
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All DBs
Position
4536641..4537429
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AA seq
262 aa
AA seq
DB search
MRLVSLNLNGIRSAVNKGLIPWVEAAEIDCMGVQELKAQHADLTADMTVLHGMQGHFHCA
EKKGYSGVGLYSRHEPSDVVIGLGHADFDAEGRYVEARYDTPQRKLSIISCYFPSGSSGD
ERQQAKFRFLDLIEPHLRALKAGREFVLMGDVNIAHQEIDLKNWKGNLKNSGFLPEERAW
MTRLLGDTGLVDVYRRLRPDATDEAYTWWSNRGQARAKNVGWRIDYHLATPGLAATARET
SIYKAQWFSDHAPLTIDYDFDL
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtctggtcagcctcaacctcaacggcatccgttctgcagtgaacaagggtctgatc
ccgtgggtggaggcagctgagatcgattgtatgggggtgcaggagctcaaggcccagcac
gccgacctgacggcggacatgaccgtgctgcacggcatgcagggccatttccactgcgcc
gagaagaaaggctactccggcgtgggcctctacagccgccacgagccgagcgacgtcgtg
atcggcctgggccatgccgacttcgatgccgagggccgctacgtcgaggcccgctacgac
acgccgcagcggaaactttccatcatcagctgttacttcccgagcggatcttcaggcgac
gaacgccagcaggccaagttccgtttcctcgacctgatcgagccgcacctgcgcgcgctg
aaggccgggcgcgagttcgtcctgatgggcgacgtcaacatcgcccaccaggaaatcgac
ctgaagaactggaagggcaacctgaagaacagcggcttcctgcccgaagagcgcgcctgg
atgacccgcctgctcggcgacaccgggctggtcgacgtctaccgccggctgcgccccgac
gccaccgacgaggcctacacgtggtggagcaaccgcggtcaggcacgggccaagaacgtg
gggtggcggatcgactatcacctggcgacgccgggtctggccgcgacggcacgggagacc
tcgatctacaaggcgcagtggttcagcgaccacgcgccgttgacgatcgattacgacttc
gatctgtaa
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