KEGG   Leptothrix cholodnii: Lcho_4084
Entry
Lcho_4084         CDS       T00681                                 
Name
(GenBank) type VI secretion ATPase, ClpV1 family
  KO
K11907  type VI secretion system protein VasG
Organism
lch  Leptothrix cholodnii
Pathway
lch03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:lch00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Lcho_4084
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:lch02044]
    Lcho_4084
Secretion system [BR:lch02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   Lcho_4084
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA ClpB_D2-small AAA_5 AAA_16 AAA_22 Zeta_toxin Sigma54_activat NBD_SMAX1 Clp_N AAA_7 AAA_14 NACHT TniB nSTAND3 ATPase_2 AAA_30 AAA_18 CbiA AAA_25 SRP54 Hpr_kinase_C Torsin Cyclin_N
Other DBs
NCBI-ProteinID: ACB36336
UniProt: B1XWY7
LinkDB
Position
complement(4577943..4580693)
AA seq 916 aa
MTEISRTALFGKLDPLAYKAIEGATVFCKMRGNPYVELQHWLAQILNTPDSDLHRIIRHY
ELDSAALAADLTRSLDRLPRGASSISDFSTFVLDAVERAWIYGSLMFGERQIRTGHLLIG
LLKTPSLRNVLLSISKQFERVKLDDLADRFASLLAASPEQSQGASDSGAAPGEASDAIPP
AAMGKQEALKRFTTDLTEQARAGKMDPIVGRDDEIRQVVDILMRRRQNNPILVGEAGVGK
TAVVEGFAQRIARGDVPPALKEVQLLALDVGLLQAGASMKGEFEQRLRSVIEEVQASPKP
IILFVDETHTLVGAGGAAGTGDAANLLKPALARGTLRTVGATTFAEYKKYIEKDPALTRR
FQSVQVDEPDEKRAILMMRGVASTMEKHHQVQILDEALEAAVKLSHRYIPARQLPDKSVS
LLDTACARVAVSLHATPAEVDDTRKRIEALETELGIIGRERAIGIDVLEREADASRLLAD
ERERLALLDQRWAEEKTLVDELLALRAKLRGGVRPVEGTGSELEAAVAPVAEGVAEPGLS
EGERADALARLREVQAQLATLQGESPLILPTVDYQAVASVVGDWTGIPVGRMARNEIDTV
LKLPTLLAQRVIGQDHAMEMIAKRIQTSRAGLDNPGKPIGVFMLAGTSGVGKTETALALA
EALYGGEQNLIVINMSEYQEAHTVSSLKGAPPGYVGYGEGGVLTEAVRRKPYSVVLLDEV
EKAHPDVHELFFQVFDKGFMEDGEGRVIDFKNTLILLTTNAGTELISALCRDPARMPDPE
GMAKALRQPLLEIFPPALLGRLVAIPYYPLSDEMLGRIVKLQLERIRKRVETRYKIPFEY
GDDVVELVVSRCTESESGGRMIDAILTNTMLPDISREFLNRMLDGTPIERVEVQVSEGNF
AYGFGPDTAAPARDEP
NT seq 2751 nt   +upstreamnt  +downstreamnt
atgaccgagatctcccgcacggccctgttcggcaagctcgacccgctggcctacaaggcg
atcgaaggcgccacggtgttctgcaagatgcgcggcaatccctacgtcgagctgcagcac
tggctggcgcagatcctcaacacgcccgattccgacctgcaccgcatcattcgccactac
gagctcgacagcgccgcgctcgccgccgacctgacgcgctcgctcgaccgcctgccgcgc
ggcgcctcgtcgatctcggacttctcgaccttcgtgctcgatgcggtcgagcgggcctgg
atctacggctcgctgatgttcggcgaacgccagatccgcaccggccacctgctgatcggg
ctgctcaagacgccgtcgctgcgcaacgtgctgctgtcgatctcgaagcagttcgagcgc
gtcaagctcgatgacctggccgaccgattcgccagcctgctggcggcgtcgcccgagcag
tcgcaaggcgccagcgacagcggtgccgcacccggcgaggccagcgacgcgatcccgccc
gcggcgatgggcaagcaggaggcgctcaagcgcttcaccaccgacctcaccgagcaggcg
cgcgccggcaagatggacccgatcgtcggccgcgacgacgagatccgccaggtggtcgac
atcctgatgcgcaggcgccagaacaacccgatcctggtcggcgaggccggtgtcggcaag
accgcggtggtggaaggtttcgcccagcgcatcgcccgcggcgacgtgccgccggcgctg
aaggaggtgcagctgctcgcgctcgacgtcggcctgctgcaggcgggggcgagcatgaag
ggcgagttcgagcagcgcctgcgttcggtgatcgaggaggtgcaggcgagcccgaagccg
atcatcctgttcgtcgacgagacccacacgctggtcggcgccggtggcgcggccggcacg
ggggacgcggccaacctgctcaagcccgcgctggcccgcggcacgctgcgcacggtgggc
gccaccacctttgccgagtacaagaaatacatcgagaaggacccggcgctgacgcggcgt
ttccagagcgtgcaggtcgacgagccggatgaaaaacgcgccatcctgatgatgcgcggc
gtcgccagcacgatggaaaagcaccaccaggtgcagatcctcgacgaggcgctggaggcc
gccgtcaagttgagccaccgctacatcccggcgcgccagctgcccgacaagagcgtcagc
ctgctcgacaccgcctgcgcccgcgtggcggtgagcctgcacgcgacgccggccgaggtc
gacgacacgcgcaagcgcatcgaggcgctcgagaccgagctcggcatcatcggccgcgag
cgcgccatcggcatcgacgtgctggaacgcgaggccgatgcatcgcgcctgctggccgat
gaacgcgagcgcctggccctgctcgaccagcgctgggccgaagagaagacgctggtcgac
gagctgctcgccctgcgcgcgaagctgcgtggcggcgtgcggccggtcgaaggcaccggc
agcgaactcgaagcggcggtggcgccggtggccgagggggtcgccgagccgggtctgagc
gagggcgagcgcgccgacgcgctggcccgcctgcgcgaggtgcaggcgcagctcgccacg
ctgcaaggcgagagcccgctgatcctgcccacggtcgactaccaggcggtggccagcgtg
gtcggcgactggaccggcatcccggtcggccgcatggcgcgcaacgagatcgacaccgtg
ctcaagctgcccacgctgctggcccagcgcgtgatcggccaggaccacgcgatggagatg
atcgccaagcgcatccagacctcgcgcgccggcctcgacaacccgggcaagccgatcggc
gtcttcatgctcgccggcacttcgggcgtcggcaagaccgaaaccgcgctggcgctggcc
gaggcgctctacggcggcgagcagaacctcatcgtcatcaacatgagcgagtaccaggag
gctcacaccgtgagctcgctcaaaggcgcgccacccggctacgtcggctatggcgaaggg
ggcgtgctgaccgaggcggtgcgccgcaagccctacagcgtggtgctgctcgacgaggtc
gagaaggcccacccggatgtgcacgagctgttcttccaggtcttcgacaagggcttcatg
gaagacggcgaaggccgcgtgatcgacttcaagaacaccctgatcctgctgaccaccaac
gccggcaccgagctgatctcggcgctgtgccgcgaccccgcgcgcatgcccgacccggag
ggcatggcgaaggcgctgcgccagccgctgctggagatctttccgcccgcgctgctcggc
cggctggtggcgatcccgtattacccgctcagcgacgagatgctcgggcgcatcgtcaag
ctgcagctggagcgcatccgcaagcgggtggagacgcgctacaagatcccgttcgagtat
ggcgacgacgtggtcgagctggtggtcagccgctgcaccgagagcgagtcgggcgggcgg
atgatcgacgcgatcctgaccaacacgatgctgccggacatcagccgcgagttcctgaat
cgcatgctcgatggcacgccgatcgagcgggtggaggtgcaggtcagcgaaggcaatttc
gcctacggcttcgggcccgacacggccgcgcccgcacgcgatgaaccctga

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