Lacticaseibacillus chiayiensis: KG086_04100
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Entry
KG086_04100 CDS
T07576
Name
(GenBank) MBL fold metallo-hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lchi
Lacticaseibacillus chiayiensis
Pathway
lchi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lchi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KG086_04100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lchi03019
]
KG086_04100
Messenger RNA biogenesis [BR:
lchi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KG086_04100
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
RMMBL
Ish1
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QVI35489
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Position
complement(850570..851811)
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AA seq
413 aa
AA seq
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MTTIRFLNGLNTIGGNIVEFATKTSRVIMDFGVAADLSQETVTSAIDQGKLPNVPELFLD
QPDPFTDEAIFISHLHIDHMGALQYLQKDIPIYLSEPSYRLYRLLIQLGIEKPVANLHPL
AFETPLAIGDLTVTGFHSDHDEPGVMALLVDDGSRRYAHSGDVRLNGPHAERVHAWAKRF
KPEKLSLFMLEGTSFSFDTPIPVEDQDHPSAPLTEMSLQSKFQQLLTDSSQLVAINPYNR
NYERLAAFQASAHASDRKMVWEPDEAAILATMTDEQPDAILGQTIQLADIAKQPERYVLQ
NSFTNLASLTDLPISAYVHSNGEPLGDYDPRFAQLKDWLADHQIPLVFMNASGHAAREDL
IELVKEVNPRVVVPWHSFHPEREAAAVDEQTNADILLPEKDLYYDFDPLTEEE
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaccattcgctttttaaacgggttaaataccatcgggggtaatattgtcgaattt
gctaccaaaaccagccgcgtcatcatggactttggggttgcggcagatttgagccaggaa
accgttacttcggccattgatcaaggaaaactgccgaatgtgccagaactctttctcgat
caacccgatccatttactgatgaggccattttcatctcccatctgcatattgaccacatg
ggcgctttgcagtacttacaaaaggatatcccgatttatctttcggaaccgtcctaccgc
ttgtatcggctgctcattcagttgggtatcgaaaaaccggtcgcgaacctgcatcccctc
gcttttgaaacgccacttgccattggcgatctcaccgtcaccgggtttcacagtgatcac
gatgaacctggcgtgatggcgttacttgtcgatgatggttcccgccgctatgcgcattca
ggcgatgttcgcctcaacggtccacatgccgaacgggttcatgcatgggcaaaacgcttt
aagccggaaaaactgagcctgttcatgctggaaggcaccagcttttcgttcgacacaccg
attccggttgaagatcaggatcatcctagcgcgccattgacagaaatgagcctgcagagc
aagtttcagcaactactgacggacagttcccaactggtggccatcaacccctataaccgc
aattatgagcgtttagcggcgttccaggcctcagcacatgccagtgatcggaaaatggtt
tgggagccagatgaagcagccattttagccaccatgaccgacgaacagcccgatgctatc
cttggccagacgatccagctggctgacatcgccaaacagccggaacgctatgtccttcaa
aacagcttcacaaatctggcttcactaaccgacttgccgatcagcgcgtacgtccacagc
aacggcgagccgctgggcgactatgatccgcgttttgcgcagttaaaagattggctagct
gaccaccagattccattggtgttcatgaacgcatcgggccatgctgctcgggaagaccta
attgaactggtcaaagaagtcaatcctcgtgtcgtcgtgccatggcacagcttccatcct
gaacgcgaagccgcagcggttgatgaacagacgaatgcggatattctattgccggaaaaa
gatttgtattacgattttgatcctttaacggaagaagaatag
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