Lacticaseibacillus chiayiensis: KG086_04440
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Entry
KG086_04440 CDS
T07576
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lchi
Lacticaseibacillus chiayiensis
Brite
KEGG Orthology (KO) [BR:
lchi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lchi03009
]
KG086_04440 (rlmD)
Enzymes [BR:
lchi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KG086_04440 (rlmD)
Ribosome biogenesis [BR:
lchi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KG086_04440 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Methyltransf_15
PrmA
MTS
Cons_hypoth95
TRM5-TYW2_MTfase
RrnaAD
Methyltransf_11
Methyltransf_32
DOT1
PCMT
Methyltransf_4
REGB_T4
CMAS
Motif
Other DBs
NCBI-ProteinID:
QVI36017
LinkDB
All DBs
Position
923041..924402
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AA seq
453 aa
AA seq
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MAQPAVIKNQDLEVTIQDLTYEGMGVAKVAGFPLFIEDALPGEKMQVHVLKVQKQYGFAK
VVKRLTDSPDRVAGADGAYIRTGIAPLSILAYPAQLKFKQHQIEELYKKAHLAIDVLPTI
GMKHPLGYRNKAQVPVRMVNGELQTGFYKKHSHDLVPIENFLIQDPKIDHAIVVVRDLLR
KYKVPAYDERTTRGVVRNIMVRRGRATHQMMIVLVSRTWQVPHLKDIVEEMALALPEVTS
VVVNLNDKRTNVILGRKSKTIYGQDYLLDKLLGSEFQISPVSFYQVNPVQTEVLYTQAIE
AAGLTGKETVIDAYSGIGTISLTMARHAKHVYGVEVVESAVRDAQANAARNHIKNVTFEV
GKAEDVIQKWKDADLPVDVLMVDPPRKGLDKSFIDAVGYMKPPKIVYVSCNPATLARDLQ
LLAAFGYTAKQTQPVDMFPQTQHIESVTALTLN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttggcccaaccagctgttatcaagaatcaggatctggaagttaccattcaggatctcact
tatgaaggtatgggcgtcgcaaaagttgctggcttcccgttgtttatcgaggatgccctg
cctggcgaaaagatgcaggtgcatgtgctcaaggttcaaaaacaatacggctttgctaag
gtggtcaaacgtctgaccgattcgcctgatcgagttgcgggggcagacggtgcttacatt
cgcacggggattgctccgttatcgattttggcttatccggcgcagttgaagttcaaacag
caccaaatcgaagaactttataaaaaagcccacttagcgattgacgtcttacccactatt
ggcatgaaacatccgctcggttatcgaaacaaagcgcaggtaccggttcgcatggttaat
ggagaattgcaaaccggtttttataaaaaacacagtcatgatcttgtgccaattgagaat
tttctgattcaggatcctaaaattgaccacgccattgtggttgttcgggatcttttacga
aaatacaaggtgccggcatatgatgagcggaccacccgcggcgttgttcgaaacatcatg
gttcgccgcggccgtgccacgcaccagatgatgatcgtcttggtatcacgcacgtggcag
gtgccgcaccttaaagatattgttgaagaaatggcgctggcattgccggaagtgacaagc
gttgtggtgaatttaaacgataaacggactaatgttatccttggtcgcaagtcaaaaacg
atttatggacaggattatcttttggataaactgctaggcagcgagttccagatttcgccg
gttagcttttatcaggtgaatccggttcaaaccgaagtgctttatacgcaagccattgaa
gctgcaggattaaccggcaaagaaacggttatcgatgcttattccggtattggcaccatt
tcgctaaccatggcgcgtcatgccaaacacgtttacggcgtcgaagtggttgaatcagcg
gtgcgcgatgctcaggcaaacgccgctcgcaaccacattaagaatgtgacctttgaagtc
ggcaaagcagaagatgtgattcagaaatggaaagacgctgacttgccggtagacgttctg
atggttgatccgccacgtaagggtttggacaagagcttcattgatgcggtgggttacatg
aagccaccaaagatcgtttatgtttcctgcaatccggcaacgttggcgcgggatttgcaa
ttgttggccgcgttcggttacaccgccaagcagacgcagccggtggacatgtttcctcag
acgcagcatattgaaagtgtcacggctttgacgcttaattga
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