Lacticaseibacillus chiayiensis: KG086_11335
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Entry
KG086_11335 CDS
T07576
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lchi
Lacticaseibacillus chiayiensis
Pathway
lchi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lchi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KG086_11335 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lchi03021
]
KG086_11335 (rpoC)
03400 DNA repair and recombination proteins [BR:
lchi03400
]
KG086_11335 (rpoC)
Enzymes [BR:
lchi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KG086_11335 (rpoC)
Transcription machinery [BR:
lchi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KG086_11335 (rpoC)
DNA repair and recombination proteins [BR:
lchi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KG086_11335 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
DUF4090
Motif
Other DBs
NCBI-ProteinID:
QVI34369
LinkDB
All DBs
Position
complement(2379511..2383188)
Genome browser
AA seq
1225 aa
AA seq
DB search
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPERDGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLDM
SPRSLEEIIYFASYVVIDPGDTPMEKKQLLTEREYREKREEYGKTFNAKMGAEAIKELLQ
DVDLDKEVTELKDDLKSAQGQKRTRAIRRLDILDAFKESGNDPAWMVMDTIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPWLKFYQCGVPRE
MALELFKPFVMRELVKRDMASNIKNARRKIDRQDDDVWDVLEDVIKERPVLLNRAPTLHR
LGIQAFEPVLVDGKSIRLHPLVCEAYNADFDGDQMAIHVPLSDEAMAEARMLMLAAHHIL
APKDGKPIVTPSQDVVLGNYYLTMEQKGREGEGMIFKDTNEILMALQNGYVHLHSRVGVA
ANSFKDKPFSDDQKKKIMVTSVGKAIFNEIMPKDFPYLNEPTQDNIVNGVPDKYFIDKGE
DIHAYLADAPLIDPFKKGFLSDIIAQVFKVYKVQRTSDLLDDMKTLGYTQSTNSGLTVGI
ADITNLKEKPEIVAAAHKKVATVSKQFRRGLITDDERHDRVIQIWNDAKDEIQQKLVDSF
DPNNPISMMSDSGARGNISNFTQLAGMRGLMAAPNGGMMEVPVISNFREGLTVMEMFMST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLVVRAIREGNEMIEPLY
DRLVGRFTMKNVLDPKSGKVLVKRNTLMDEDMAQKIVDAGVEAVTIRSVFTCNTKHGVCQ
KCYGRNMATGEQVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGEDITQGLPRVQEI
FEARNPKGEAVITEVTGEVTAIDENPAEHTREITVKGETDTRTYSVPYASSVAVAEGDHV
NRGERLTGGSIDPKQLIKVRDVMATENYLLSEVQKVYRMQGVDIGDKHVEVMVRQMLRKI
RVMDPGDTNILPGTLLDIADFKEKNTQAIISGGIPATGRPVLLGITKASLETNSFLSAAS
FQETTRVLTDASIRGKNDPLVGLKENVIIGKIIPAGTGMATYRHEEPKSVGTVSDSVYSI
SDIEKQMKEKDSQQKDDQQDDADNK
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtcaataagtttgaaagtatgcaaatcggcttagcctcgccggacaagatt
cgcagctggtcgtatggggaagtcaaaaagcctgaaacgatcaactatcgaaccttaaag
cctgagcgggacggcttgttcgatgaacgcatcttcggaccgactaaggactgggaatgt
gcctgtggtaagtacaagcggatccgctataaggggattgtttgtgatcgctgtggggtt
gaagtgacacgttccaaggttcggcgtgagcggatgggccatatcgaattagccgcaccg
gttacccacatctggtacttcaagggcatcccaagtcggatgggtctggtactggatatg
tcgccacggtcactggaagaaatcatctattttgcttcttacgttgtgattgatccaggc
gatacgccaatggagaaaaagcaacttctgaccgaacgcgaatatcgtgaaaagcgcgaa
gaatacggcaaaaccttcaatgccaagatgggtgctgaagccatcaaggaattgttacag
gatgtcgatctcgacaaagaagtgaccgaattaaaagatgacctgaagtcggcgcaaggc
caaaaacggacacgcgcgattcgccggttggacattctggatgccttcaaggaatccggt
aatgatccggcatggatggtcatggacaccattccagtcatcccgccggatttgcggcca
atggttcagctcgaaggcggccggtttgcaacatctgatttgaacgatctgtatcgtcgg
gtcatcaaccgtaacaaccgtctgaagcgactgcttgacctgaatgcaccaagtatcatt
gttcaaaatgaaaagcggatgctgcaggaggcggttgacgctttgatcgataatggtcgg
cgtggtcgtccggttaccggtccaggaaaccgtccgcttaagtctctgtcacacatgctg
aaggggaagcaaggtcggttccgtcagaacttgcttggtaagcgagttgactactctggt
cgttccgttatcgatgttggcccatggctgaagttttaccagtgtggcgtaccgcgtgaa
atggccctggaactcttcaagccattcgtgatgcgcgaactggttaagcgggacatggca
agcaacatcaagaatgcccggcgtaagatcgatcggcaggatgatgacgtttgggatgtg
cttgaagatgttatcaaggagcggccggtactcttaaaccgtgcgcctacgctgcatcga
cttggcattcaggcgtttgaacctgttttggttgatgggaaatccattcggttgcaccca
ttggtctgcgaagcttataacgcggactttgacggtgaccaaatggcgattcacgtgccg
ttgtctgatgaagcgatggctgaagcacggatgctcatgcttgcggcgcaccacattttg
gcgccaaaagacggcaaaccaatcgttaccccttcgcaggacgttgtgttaggtaactat
tacctgaccatggagcaaaagggtcgcgaaggcgaaggcatgatcttcaaggacaccaac
gaaatcttgatggcgctgcaaaatggctatgttcatttgcacagtcgggtcggcgttgca
gccaactccttcaaagacaagccattttcggatgaccaaaagaagaagatcatggtaaca
agtgtcggcaaggcgatctttaacgagattatgccaaaagacttcccgtacctgaatgaa
ccgacgcaagataacattgtcaacggtgtgcctgataagtacttcatcgacaagggtgaa
gatattcacgcttatctggcggatgcacctttgattgatccattcaagaaaggcttcctg
tctgacatcattgcgcaagtcttcaaggtttataaagttcagcggaccagtgatttactg
gatgacatgaagactttgggctatacgcaatccactaactctgggttgactgtcgggatt
gccgacatcaccaacttgaaggaaaagccggaaattgtggcagcggcccataagaaggtt
gcaactgtttctaagcagttccggcgtgggttgatcaccgatgatgaacgccatgatcgg
gttatccagatttggaacgatgccaaagatgaaattcagcaaaagctggttgattctttt
gacccgaataacccaatttccatgatgtctgattctggtgctcgtggtaacatctcaaac
ttcactcagcttgccggcatgcgtggtctgatggctgcgcctaacggtgggatgatggaa
gtgccggttatctcgaacttccgtgagggtctgaccgttatggaaatgttcatgtccact
cacggtgctcgtaaagggatgactgatacggcgctgaagacggctgactcgggttatctg
actcggcggctggttgatgtggcgcaggatgtcattgttcgtgaagaagattgtggcacc
gatcgcggtttggtcgttcgcgctatccgtgagggtaacgaaatgattgagccgctgtat
gatcgacttgtcggtcgatttaccatgaaaaacgtgcttgatcctaagagcggcaaagtc
ttggttaagcgcaataccttgatggatgaagatatggcgcagaagatcgtggatgccggt
gtcgaagccgtcaccatccgttcggtcttcacctgcaatactaaacatggtgtttgccag
aagtgctatggccgtaacatggccaccggcgaacaggttgaagtcggtgaagcagtcgga
accgttgctgcccagtcaatcggtgaaccaggtacccagctgaccatgcgtaacttccat
accggtggtgttgctggtggcgaagatattacccaagggctgcctcgtgttcaggaaatc
tttgaagcgcggaaccctaaaggtgaagctgtgatcacggaagtcaccggtgaagtaacc
gctattgatgaaaatccggctgagcatacgcgtgaaattacggtgaagggtgagactgat
acccgaacctatagtgtaccgtatgcatccagtgtggcggttgcggaaggcgatcatgtt
aaccgcggcgaacgactgacaggcggttcaattgatcctaagcagttgatcaaagtgcgt
gacgtgatggcaaccgaaaactacctgctttctgaagtccagaaagtttaccgtatgcag
ggtgttgatattggtgataagcacgttgaagtcatggttcggcagatgttacgcaagatc
cgcgtcatggatccgggcgatacgaacatcttgccaggaaccttgctcgacattgcggac
ttcaaggagaagaacacgcaagcgatcatcagtggcggcattccggctactggacgtccg
gttctgttaggtattaccaaggcttccttggaaactaacagcttcctgtcagctgcttcc
ttccaggaaacaacgcgagttctgaccgatgcttccattcgtggtaagaacgatccgtta
gttggcttgaaggaaaatgttatcattgggaagatcattccggctggtaccgggatggca
acgtatcgccacgaagaaccgaagagtgtcggcacggtttccgatagtgtctattcgatt
tccgacattgaaaagcagatgaaggaaaaagatagtcagcaaaaagacgaccaacaggat
gatgctgacaataagtaa
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integrated database retrieval system
