Lacticaseibacillus chiayiensis: KG086_11550
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Entry
KG086_11550 CDS
T07576
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lchi
Lacticaseibacillus chiayiensis
Pathway
lchi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lchi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KG086_11550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lchi03019
]
KG086_11550
03009 Ribosome biogenesis [BR:
lchi03009
]
KG086_11550
Enzymes [BR:
lchi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KG086_11550
Messenger RNA biogenesis [BR:
lchi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KG086_11550
Ribosome biogenesis [BR:
lchi03009
]
Prokaryotic type
rRNA helicases
KG086_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
GRP
Helicase_RecD
CMS1
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QVI34397
LinkDB
All DBs
Position
complement(2425301..2426812)
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AA seq
503 aa
AA seq
DB search
MKFKELGLDHDLLKAIAQSGFEEATPIQAETIPLVLEGKDVIGQAQTGTGKTAAFGLPIL
QHIDKADRSIQALVISPTRELAIQTQEELYRLGRDKKIKVQAVYGGADIRRQIRQLAEHP
QIVVGTPGRILDHIGRHTLKLEHLDTLVLDEADEMLDMGFIDDIEKIVEQMPTDRQTLLF
SATMPAAIMRLTNKFMKNPEIVKIKAKELTADTVEQYYVRAKDYEKFDVMTRLFDVQDPD
LALIFGRTKRRVDELTRGLKARGYRAEGIHGDLTQQKRMSVLRQFKSGQLDFLVATDVAA
RGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSVTFVTPNEIEYLHTIEDLTKK
RMLPMKPPTAEEALMGQISSGLATIKEQVEANDTEKYEAMAETLLENYTPLQLVSAYLKA
VSPDDASAVPVKITPERPLPRRGHNGHGHGNNRGGGYKGGYKGKRREGGYQGNRDGRRSY
DKKRNFGEKRKNVKRNFKIRSGE
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttaaagaactaggtttggatcatgatctcttaaaggcgatcgcacagtcaggt
tttgaagaggcgaccccgattcaagcggagacgatcccactggttctggaaggcaaagat
gtgatcggacaagcacagaccggtaccgggaaaacggcagcgtttggcttgccaattctg
caacacatcgataaagctgaccggagtatccaagcattggtcatttccccaacccgggaa
ttggcgattcagacccaagaagaactttatcgtttaggtcgcgacaagaagatcaaggtg
caagcagtctacggtggcgctgatatccgccgccagattcgccaacttgccgaacacccg
caaatcgtggtcggaaccccaggacggattcttgatcatatcgggcggcacactttgaag
ttggaacatcttgataccttggtattagatgaagccgacgaaatgctcgacatgggcttc
attgacgatatcgaaaagatcgtcgaacaaatgccgacagaccggcagacattgctgttt
tctgccaccatgccggcagccatcatgcgtttgaccaacaagttcatgaaaaacccagaa
atcgttaaaattaaagctaaagaacttaccgccgataccgttgaacaatattatgttcgc
gcaaaagactatgaaaagttcgatgtgatgacgcgcttgtttgacgttcaggatcctgat
ctggcgttaatttttggccggaccaagcggcgggtcgatgaattgacccgtggcttgaag
gctcgtggttatcgcgctgagggtattcacggcgacttgacgcagcaaaaacggatgagc
gttttgcgtcaattcaagagtggccagttggactttttggtggcaacggatgtggcagcg
cgtggcttggacatttccggtgtgacgcatgtttataactatgacattccgcaagatcct
gattcatatgtgcaccgtatcgggcggaccggtcgtgcgggacacaaaggagtttcggta
acgtttgtcacaccgaatgaaattgaatacttgcacacgatcgaagacttgacgaaaaaa
cggatgttgccgatgaagccgccaaccgctgaagaagcgttgatgggtcagatttccagc
ggcttggcaaccatcaaagaacaagttgaagccaatgataccgaaaagtatgaagccatg
gcggaaacgcttttggaaaattacaccccgctgcaattggtctctgcttacctcaaagca
gttagccctgatgatgctagcgccgttccggtcaaaattaccccagaacggccactgcct
cgacgcggtcacaacggtcatggccacggcaacaatcgtggcggcggttataaaggcggc
tataagggcaagcggcgcgaaggtggctatcaaggcaaccgtgacggtcggcgcagctat
gacaagaagcgcaactttggcgagaagcgtaagaacgttaaacgcaactttaaaattcgt
tcaggcgaataa
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