Lacticaseibacillus chiayiensis: KG086_11900
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Entry
KG086_11900 CDS
T07576
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
lchi
Lacticaseibacillus chiayiensis
Pathway
lchi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lchi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KG086_11900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lchi03400
]
KG086_11900
DNA repair and recombination proteins [BR:
lchi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KG086_11900
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KG086_11900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
SMC_N
DnaJ_CXXCXGXG
AAA_29
AAA_21
nSTAND1
RsgA_GTPase
AAA_23
AAA_25
DUF4350
nSTAND3
ATPase
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QVI34465
LinkDB
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Position
2498154..2500682
Genome browser
AA seq
842 aa
AA seq
DB search
MAIPDHISVRGAYVNNLKHLNVDIPLNKLVAITGRSGSGKSSLAMGVLYAEGMRRYMSAL
STYTRRRLGQTSPAAADSVKHIPSAIALRQRPVVPGIRSTVGTATEALNVIRLMFSRLGS
PVCPNGHRVPPTLDIAKAMDLPNDGESGMGMITCPTCGVHFMAFAAEDFAFNSTGACPTC
GGTGQARTLAANRLIPDQTLTIRQGAVASWRLPGRNFMPYVVQAIGIDIDTPFQDLPKDQ
QEQVWHGPRKKYAINIPSKTGRVFHMDHAQYENAFNAVEDSLATTKNERAIQRLNRFYEF
GVCPTCHGSRFAPKLLSQLLVDQNIAQVSNMTLTQLSAFIPKIYQWLPENMQALAHDIIK
ELTQLLKPIMDLGLSYLTLGRAAASLSTGELQRIQLSRTLRTETTGVLYVLDEPSIGLHA
ANVAGLLEVMHDLVDQGNSLVVVDHNTAIINAADHIVEIGPGAGVDGGRILDQGDPAEIS
RNPKSLIAPFLTGKTKLIVRPQAGAEAVSKAKQLQLTVTDRFNLHNLHVGFPINCFSVVS
GFSGAGKSTLIFDALVPALSTTKKQPGPTFVRDLKNGGIRRVVAIDATPVGKNVRSTVAT
YTDILDHLRYLFAALPDAKAKHYTSSHFSYNVKAGACPTCGGTGVINLDIQYLPDMQQTC
PTCHGRRYNPEVLKIKWHDRNIADLLDLDVDTALKVFKDEPAIVHTLQTLHDMGLGYLHL
GESTPTLSGGEAQRLKLVAHMGRSQKDTLFVFDEPSVGLHPLDVQTLVAVFQRLLKTGAT
VIAIEHDLDVIANADYVLDLGPKGGAEGGRIMAAGTPQAIARQGQGETAKYLAAHLAAFQ
VK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcaattccagatcatatcagtgttcgcggtgcctatgtcaataacttgaagcacctt
aacgtagatattcccttaaacaaactcgtggcgattaccggtcgttcaggctctggtaaa
agttcgctggcgatgggcgttttatacgcagaaggcatgcggcggtatatgagcgcctta
tcgacttatacgcgtcggcggttaggtcagacgagtccggcggcggccgattcggtcaag
catattcccagtgcgatcgcgctcagacagcgaccggttgtgcctggcattcgctcaacc
gtcggcactgccacggaagccttaaatgtgattcggcttatgttttcccgtctcggttca
cccgtttgcccaaatggccaccgcgttccgccgacacttgatattgccaaagccatggat
cttcctaatgatggtgaaagcgggatgggcatgattacctgcccgacttgcggggttcac
tttatggcctttgcggcagaagattttgccttcaactcaaccggcgcctgcccaacctgt
ggcggcacgggtcaagcgcggacgctggcggccaatcgtcttatccccgaccaaacgctg
acgattcgccaaggcgccgttgcatcatggcgactgcccggccggaacttcatgccttac
gttgtccaagcaatcggcatcgacatcgatacccccttccaggatctgcccaaagaccag
caggaacaggtatggcacgggcctcgcaaaaagtatgccattaacattcccagcaaaaca
ggcagagttttccacatggaccatgcacaatacgaaaatgccttcaatgcggtcgaagac
tccttagccaccaccaagaatgaacgcgcgatccagcgcctgaatcggttttatgaattc
ggtgtctgccccacctgccatggtagccggttcgcgccaaaactgttgtcacaacttttg
gttgatcaaaacatcgcacaggtcagcaatatgaccctgacgcagctttccgcctttatc
ccgaaaatctaccagtggctacctgaaaatatgcaggcgctggcgcacgatatcattaag
gaattgacgcagctgctcaagccaatcatggatttgggtctgagctacctgacattaggc
cgagccgccgcgtcgctatccaccggtgaattgcagcgcattcaactcagccggacgttg
cgtaccgaaacgaccggcgttctttatgttctcgacgagccttccatcgggttacacgct
gccaatgttgccggtttactggaagtcatgcatgacttggttgatcaaggtaactcactg
gttgtcgtggatcacaacacggcgatcatcaacgctgccgatcacatcgttgaaatcggt
ccgggtgcaggcgttgacggcgggcgcattctcgatcaaggcgatccagccgagatcagc
cgtaatccaaagtcactaattgcaccatttttaaccggcaaaaccaaactcattgtccgc
ccgcaagctggtgccgaagcggtttccaaggccaagcagttacagctgaccgtgaccgat
cgcttcaacctccacaacttgcatgtcggcttcccgattaactgcttctccgtggtatca
ggattctccggcgctggcaagtcaacgctcattttcgacgcgttagtcccggcattgtcg
acaacgaagaagcagccgggcccgacttttgtccgcgatctcaaaaatggcggcatccga
cgcgtggtcgccattgatgccacgccggttggcaagaatgtgcgttcaactgttgccacc
tacactgacattctcgatcacctgcgttatctgttcgcagctttgccagatgccaaagcc
aagcattataccagcagtcacttctcctataacgtcaaggcgggtgcttgtcccacttgt
ggcggcaccggtgtgattaatctggacattcaatatttgccggatatgcagcaaacctgc
cctacctgtcatggtcgacgttacaatcctgaggtcttgaaaatcaaatggcacgaccgc
aacattgccgacctgctggatctcgacgtggataccgcactcaaggtgttcaaggatgaa
ccggcaatcgtccacacgctgcagacacttcacgacatggggcttggctatctgcattta
ggcgaaagcacgcccacactatcaggtggtgaggcgcagcgactcaaactggttgcacac
atgggccgttcccaaaaagatacgttattcgttttcgacgaaccttccgttgggttgcat
ccccttgatgtccaaacgctggtggcggttttccaacgacttttaaaaaccggcgcaacc
gtcattgccattgagcacgacctagatgtcattgccaacgccgactatgttttggactta
gggccaaaaggcggggctgaaggcggccggatcatggctgccggaacgccgcaagccatc
gcccgccaaggccaaggcgaaaccgccaaatatttagcggcacatctggcggcttttcaa
gttaaatga
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