Leuconostoc citreum: LCK_00409
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Entry
LCK_00409 CDS
T00663
Name
(GenBank) Predicted HD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lci
Leuconostoc citreum
Pathway
lci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCK_00409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lci03019
]
LCK_00409
Messenger RNA biogenesis [BR:
lci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCK_00409
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
IFT57
Motif
Other DBs
NCBI-ProteinID:
ACA82242
UniProt:
B1MXJ0
LinkDB
All DBs
Position
425442..426998
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AA seq
518 aa
AA seq
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MAVTIISALFAIVIGIGVGYYLHLSSDKKKITSTKQIADNILEQANNEAKSLTRAAKTDA
KEMAQDYRHQVDNDFKDRQKQLQQQEQRLEDRISNLDKKDAALNQRDAQLIQKENQVQQR
LDDANNKQKLADNLVTSQKEKLEEIAQLTPEDAKEQILSKTKQRLVRQRAALIKEYEEDA
TSEAEKRARNVIVQAIQRSSADAVADVTVSVVHLPSDDMKGRIIGREGRNIRTLESLTGI
DLIIDDTPESVVLSGFDPIRRQIAKMALDALVADGRINPSRIEEMVEKAKRQIDETIREK
GEEAVFELGLRGLHPDLIKMIGRMNYRTSYGQNVLQHSIEVAKLAGMMAAELKMDVALAK
RAGLIHDIGKAVDAEVEGSHVELGVRLAEKFNEKPVVINAIASHHGDVETISPISELVAA
ADAISAARPGARSESLENYVQRLKDLEAIANHYDGVETAFAIQAGREVRVIVEPTKLNDL
QATVLAHDIKTDVEEKLEYPGHVKITVVRETRATDYAH
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgacaatcatttcggcgctcttcgcaattgtaattggtattggtgtagggtat
tatctacatttgtcatctgacaaaaagaaaatcacttcaacgaaacaaattgcagataac
attcttgaacaagcgaataatgaagctaaaagtttaacacgtgcagctaagactgatgca
aaagaaatggcgcaagattatcgacatcaagttgataatgatttcaaagatcgtcaaaag
cagctgcaacaacaagaacaacggcttgaagaccgtatctcaaacctcgacaaaaaagat
gcggccttgaatcaacgtgatgcacaattgattcaaaaagaaaaccaggtacaacagcga
ttagatgatgcgaataataagcagaaacttgctgataacttggtcacatctcagaaagaa
aagttagaggaaattgcgcaactaacgcctgaagatgcgaaagaacaaattttaagcaaa
acgaaacaacgtttggtgagacaacgcgccgctctgattaaagaatatgaagaagacgca
accagtgaggccgaaaaacgtgcacgtaatgttatcgtgcaagcaattcaaaggtcgtct
gcagatgcagtggctgatgtcactgtttcagttgtccatttgccaagcgatgacatgaaa
ggccgtattattggccgtgaaggtcgtaatattcggacattagaatcattaacgggtatt
gatctaattattgacgatacccctgaatcagtcgtattgagtgggtttgatccaattaga
cgtcagattgctaagatggcgttagatgctcttgtagctgatggccgtatcaatccatca
cgcatcgaagagatggttgaaaaagcaaagcggcaaattgacgaaacaatacgtgaaaaa
ggtgaagaagcggtatttgaacttggtttacgtggtcttcaccctgatttgattaaaatg
attggtcgtatgaactatcgtacgtcttacggtcaaaatgtgttgcaacattcgatagag
gtcgcaaaacttgcgggaatgatggcagcagagcttaaaatggatgtcgcgcttgcgaag
cgcgctggtttaatacatgatatcggtaaagctgtggacgccgaagttgaaggttcccat
gtggaactaggtgttcgcctagccgaaaagtttaacgaaaaaccagttgttattaatgca
attgcttcacatcatggtgatgttgagacaatttctcctatctcggagcttgtagcagct
gcagatgcaattagtgctgctagacctggagcacgtagcgaatcattagaaaattatgtt
caacgtctaaaagatttggaagcaatcgctaatcactatgatggtgttgaaacggctttt
gctatacaagctgggcgtgaagtacgcgtcattgttgaaccaactaaattaaatgatttg
caagcgacagtgttagcgcatgacataaaaacagatgttgaggaaaaacttgaatatccg
ggacatgtcaagataacagtcgtacgtgaaacacgtgcaacagattacgcacactaa
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