Leuconostoc citreum: LCK_00640
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Entry
LCK_00640 CDS
T00663
Symbol
recD
Name
(GenBank) ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
lci
Leuconostoc citreum
Pathway
lci03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LCK_00640 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lci03400
]
LCK_00640 (recD)
Enzymes [BR:
lci01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LCK_00640 (recD)
DNA repair and recombination proteins [BR:
lci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LCK_00640 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
OB_YrrC
HHH_RecD2
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
SLFN-g3_helicase
AAA_12
AAA_22
NPHP3_N
AAA
TIP49
UvrD_C
TrwB_AAD_bind
DUF815
nSTAND3
AAA_28
AAA_16
NACHT
AAA_29
NTPase_1
HHH_5
TsaE
AAA_5
AAA_7
NB-ARC
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ACA82472
UniProt:
B1MY70
LinkDB
All DBs
Position
673154..675553
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AA seq
799 aa
AA seq
DB search
MVYQEEQQLDKVSGTLQHVIFASNDSYFKILSIQIDDATLNQWDEPEIIATGTFADVQEG
SMYAFYGTIVRHPKYGKQLKVVRYEHEMPPDENGLIKYFASGQFSGIGQKTAEKIVEHLG
LNAVDLILNDATVLDGLVKPATAQKLVRNLQLNLGLERLFQIGNQFGIGADITGRLYDQY
GQEAQDILLHDPYRLVFEFDGISFKVADVVGQQLGIDRLDTKRLQAAVYAAIMNVSFQYG
HTYVTREQLRQISYQLLRENRIDSAIDSAITMLIEQHVLTVDDDKIYATTLYVAENQVAQ
HLTRLVHAPAPIDLTAADVDSGFDTPSQLILDDTQIAAVKAGLNAQVFLLTGGPGTGKTT
IVKSIVATWQKILQHHAKFADNAQDFLKLYAVKMASPTGRAAKRMTEVTGHDATTIHRLL
GITDLGEPEFDNENPISGGLLIIDEASMLDIELTAKLLAAIPSGMKLIIVGDSDQLPSVG
PGNVLADLVNSGILPHIELETIYRQGRGSSITALAQNIKSGRLPEDFLENKHDRSTFMVS
PEQAETAIKQVVQAAIKKNYTQDDLQILTPIYKTSAGVLTLNTMAQALFNPEKATKKSLQ
FGHTYFRKGDKVLQLENDSERDVYNGDMGTIIAVQSKQDKGNEDHEDRLVVDFDGKELAY
TKKDLSQLTLAYATTVHKAQGNEFKLVIMVLTSQFGLMLNRNLLYTGITRAKEALILVGD
YQAFNRAAKTPVPQRATTLKQRLQASIVDNKTSEKTIIKQDEPEKTVLTYQLTAGIISAQ
TIDPMIGMNEVTPDDFMLN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggtttatcaggaagaacaacaattagataaggtatctggtacgttacaacatgtgatt
tttgcgtctaatgactcttatttcaagattttgtctattcaaatagatgatgcaacgtta
aaccaatgggatgaaccagaaattatagctaccgggacatttgctgatgttcaggaaggc
agtatgtatgctttttatggtacaatcgtgcggcacccaaagtatggtaaacaactcaag
gtggtgagatatgagcatgaaatgccgccagacgaaaatggattaattaaatactttgct
agtgggcaattttctggtattggtcaaaaaacagctgaaaaaattgtcgaacatctaggc
ttaaatgctgtagatttaatcttaaatgacgccactgtgttagatggcttagtaaagcct
gcgacagcacaaaagttagtacgtaatttacaattaaatctagggttagaacgactattt
caaattggtaatcaatttggtattggagcagatattactggccgtttatatgatcaatac
ggtcaagaggcacaagatattttgttgcacgacccttatcgtctcgtgtttgaatttgat
ggtatatcatttaaagtagctgatgtagtcggtcaacaattgggcatcgacagattagat
accaaacgtttacaggctgcagtatatgcggccatcatgaatgtgagttttcagtatggc
catacatacgtcacgcgtgaacaactccggcaaataagttatcaattattacgtgaaaat
cggattgactcagctattgattcagcgataacgatgttgattgaacagcatgttttaaca
gttgacgacgataaaatttacgcaacgaccctttatgtcgctgaaaatcaggttgcacag
catttgacacgcttggtccatgcaccagcaccgattgacctaacagcagctgatgttgat
tcagggtttgacacaccaagccaattaatattagatgacacacagattgcggccgtcaaa
gcagggcttaatgcgcaggtgtttttattaactggtggcccgggaactggtaaaaccact
attgttaaatcaattgttgcgacgtggcaaaaaatactacagcaccatgccaaatttgcc
gataacgctcaggattttttaaagttatatgccgttaaaatggcctccccaactggtcga
gcagctaaacggatgactgaagtgactggacatgatgcgacaactattcatcgtttactt
ggaattactgatttgggggagccggaatttgataacgaaaatccaatttccggtggactc
ttaatcatcgatgaagcctcaatgctggatattgagttaacggctaagttgttggcagcc
attcctagtggtatgaaattgattatcgttggtgattcagatcaactaccttccgttggg
ccgggcaatgtcttagctgatttggttaacagtggtattctgccacacattgagcttgaa
acgatttatcgacaaggccgtggtagtagtattaccgcattagcacaaaatattaaaagt
ggccgattacctgaggatttcttagagaataaacatgatcgttccacgttcatggtatca
ccagagcaagcagaaacagcgattaaacaagttgtacaagctgcaattaagaaaaactat
acacaagatgacctacaaatattaacacccatttataaaacatcagctggtgtgctgaca
ttaaatacgatggcacaagcactatttaatccagaaaaggcaacgaaaaagtcactgcaa
tttgggcacacctattttcgtaagggtgataaagttttacagttggaaaacgatagcgag
cgggatgtttacaatggtgacatgggcacaattattgctgttcaatctaaacaagataag
ggcaatgaagatcatgaagaccgtttggtcgttgattttgatggcaaagagttagcatat
actaaaaaagatctcagtcaacttactttggcatacgcgacaacagttcacaaagcgcaa
gggaatgaatttaaattggtcattatggtcctgacctctcaattcggtcttatgctgaat
aggaacctattgtacacaggaatcacacgagctaaagaagcattaattttggttggtgat
tatcaagctttcaatcgggcagccaaaacaccggtgccacaacgtgcgactactttaaag
cagcgcttacaagcatcaattgtcgacaataaaacctctgaaaaaacaattatcaagcaa
gatgagcccgagaaaaccgttctaacttaccaactgacagctggtattatttcggcgcaa
accattgatccaatgattggtatgaacgaggtcaccccagatgatttcatgttaaattaa
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