Leuconostoc citreum: LCK_01547
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Entry
LCK_01547 CDS
T00663
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lci
Leuconostoc citreum
Pathway
lci03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lci00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCK_01547 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lci03021
]
LCK_01547 (rpoC)
03400 DNA repair and recombination proteins [BR:
lci03400
]
LCK_01547 (rpoC)
Enzymes [BR:
lci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCK_01547 (rpoC)
Transcription machinery [BR:
lci03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCK_01547 (rpoC)
DNA repair and recombination proteins [BR:
lci03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCK_01547 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ACA83371
UniProt:
B1MVW7
LinkDB
All DBs
Position
complement(1621145..1624807)
Genome browser
AA seq
1220 aa
AA seq
DB search
MAIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDYE
CACGKYKRIRYKGIVCDRCGVEVTSSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLVLD
MSPRSLEEIIYFASYVVIEPGDAPVEKKQLMTEREYRELKREYGASFKAGMGAEAIKDLL
ASVDLAAEADQLKRELQEATGQKRVRAVRRLDIIEAFLQSDNKPQWMVMDVIPVIPPDLR
PMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIDVGPFLKMNQMGLPR
PMAIELFRPFIMKELTTRKLAGNVKSAKRKIDKADEDVMDVLEDVIKEHPVLLNRAPTLH
RLGIQAFEPVLVSGKAMRLHPLVTEAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAGHI
LAPKDGKPIVAPSQDMVIGNYYLTTEEAGREGEGMIFSSVEEAKIAFASKVVHYHTRIGI
QTSSFPEAKPFTDEQRSKIMVTSVGKLIFNEILPVDFPYINEPSEDNFKGISDQFFIEPG
EDIHDYLADTAVIGAFKKGFLSDVIAEVYKRYKVTETSLLLDRMKDLGYEKSTESGLTVS
MNDVTELTEKPAILEDAHKQVATVTKQFRRGLITDSERYQRVTEIWTKAKDVIQDKLIAS
FEPTNPIFMMQDSGARGNISNFVQLAGMRGLMAGPGGKIIELPVTANFREGLTVMEMFIS
THGARKGMSDTALKTANSGYLTRRLVDVAQDVIVREWNNNADRGVAVKAIMDGTSVVEPL
YDRILGRYAMKSVFNPETGDKLVSRNEMIDEDVAKAIVAAGIEEVTIRSVFTSTTEHGVS
VLDYGRNLATGEEVEVGEAVGTVAAQSIGEPGTQLTMRNFHTGGVAGGNDITQGLPRVQE
IVEARIPKGRAEISEVTGTVVAIEENPAERTKAVTIEGETDTRTYTLPLAARMRFAEGDD
IQRGDAINEGPIDPKELLAVTDTLTTESYMLTEIQKVYRLQGIEVSDKHIEVMIRQMLRK
VRVMDPGETSLLPGMLMDIADFQRANEPALFDGLVPATARPVLLGITKAALETNSFLSAA
SFQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMAEYRKIKSKVVGEVVAQPEV
EQEPTPDIPKLDDVAKSFEE
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcgatgttaacaagttcgaaagcatgcaaatcggtttggcttctcctgataag
atccgttcatggtcttatggtgaagtaaagaagcctgaaacgattaactatcgaacactt
aagccagaaaaagatggcctgtttgatgaacgcatcttcggacctacaaaggattatgaa
tgcgcctgcggtaaatataagcgaatccgatacaagggaatcgtttgtgatcgctgtggc
gttgaagtcacatcatcaaaagttcgtcgtgaacgtatggggcacatcgaattagctgca
cctgttacacatatttggtacttcaaaggtatcccgtcacgtatgggacttgtcttagac
atgtcaccacgctcacttgaagaaattatttactttgcgtcatatgttgtcattgaacct
ggtgatgcaccagttgaaaagaagcaattgatgacagaacgtgagtaccgtgaactgaag
cgcgaatatggtgctagttttaaggctggcatgggtgctgaagcaattaaagatttgttg
gcaagtgttgatttagctgccgaagcagatcagttgaagcgcgaattacaagaagcaaca
ggtcaaaaacgtgtacgtgccgtacgtcgtttagatattatcgaagccttcttgcagtca
gataataagccgcaatggatggttatggatgtgattccagttattccaccagacttgcgt
ccaatggttcaattagagggtggtcgtttcgccacatctgatttgaatgatttgtatcgt
cgtgtcatcaaccgtaacaatcgtttgaagcgtttgcttgatttgaatgccccaggcatt
atcgtgcaaaatgaaaagcgtatgttgcaagaagccgttgatgcattaattgataatggt
cgtcgtggtcgtcctgtagctggaccaggtaatcgaccattgaagtcgctatctcacatg
ttaaagggtaagcaaggtcgcttccgtcaaaacttgttgggtaagcgtgttgattactca
ggtcgttcagtcattgacgttggaccattcttaaaaatgaaccaaatgggattgccacgt
ccaatggcaattgaattgttccgtccgttcatcatgaaagaattgaccacacgtaagttg
gctggcaatgttaagtcagctaagcgtaagattgacaaagctgatgaagatgtgatggat
gtattggaagacgttatcaaagaacacccagttcttttgaaccgcgcacctacactgcat
cgtttgggaatccaagcttttgaaccggtattggtttcaggtaaggcgatgcgtttgcat
ccactggttaccgaagcctataacgccgattttgatggcgatcagatggccattcacgta
ccattatctgatgaagcacaagctgaagcacgtttgctgatgcttgctgcaggtcatatt
ttggcacctaaagatggaaagccaattgtggcaccatctcaggatatggttattggaaac
tattacttaacgaccgaagaagctggtcgtgaaggtgaaggtatgattttctcttcagtt
gaagaagcaaaaattgcctttgcaagtaaggtagtccattaccacacacgtattggtatc
cagacgtcttcattcccagaagcaaaaccatttactgatgaacaacgttcaaagattatg
gtgacgtctgttggtaaattgatttttaatgagattttgccagttgattttccatatatt
aatgaaccatctgaagataacttcaagggtattagtgatcaattcttcatcgaacccggt
gaagatattcatgactatttggctgacacagcagttattggcgctttcaaaaaaggcttc
ttatcagatgttattgctgaagtctataagcgttacaaggtaaccgaaacatcattgctt
ttggatcgtatgaaagatcttggttatgaaaagtcaactgaatctggtttgactgtttcg
atgaatgatgtgacagaattgactgaaaagccagctattctggaagatgcacacaagcaa
gttgcaacagtgaccaagcagttccgtcgtggtttgattactgatagtgagcgttatcaa
cgtgttactgaaatctggacaaaagccaaagatgttatccaagataagttgattgcgtcg
tttgaaccaactaacccaatcttcatgatgcaagattcaggtgcgcgtggtaacatttcg
aacttcgttcaattagctggtatgcgtggcttgatggctggtcctggtggtaagattatt
gaattgccggttactgccaacttccgtgaaggcttaactgtgatggaaatgtttatttca
actcacggtgcgcgtaagggaatgtcagatacggccttgaagactgccaactctggttac
ttgacacgtcgattagttgatgttgcgcaagacgttatcgttcgtgaatggaataataac
gctgaccgtggtgttgctgttaaagcaatcatggatggtacatctgttgttgaaccattg
tacgatcgtatcttgggtcgttacgcaatgaaatcagtctttaatccagaaacgggtgat
aagttagtttcacgtaacgaaatgattgatgaagatgttgctaaagcaatcgttgcagct
ggcattgaagaagtaaccattcgttccgtctttacttcaacaacagaacacggtgtgtca
gtgttagactacggtcgcaacttggctactggtgaagaagttgaagttggtgaagcagtt
ggaaccgttgcagcacagtcaatcggtgaaccaggtacacaattgaccatgcgtaacttc
catacaggtggtgttgctggtggaaacgatattacccaaggtttgcctcgtgtgcaagaa
attgttgaagcacgtattcctaagggacgcgccgaaatttctgaagtaacgggtacagtg
gttgccatcgaagaaaatccagctgaacgtacaaaggctgtaacgattgaaggcgaaact
gatacacgtacgtacacactaccattggcagcgcgtatgcgttttgctgaaggggatgac
attcaacgtggtgatgccattaatgaaggaccaattgatcctaaggaattgcttgcggtc
actgatacattaacgacagaatcatacatgttgacggaaatccaaaaggtttaccgtttg
caaggtattgaagtgtctgataagcatattgaagttatgattcgtcaaatgttgcgtaag
gtacgcgtcatggatccaggtgaaactagtcttttgccaggtatgttaatggatattgcc
gatttccaacgagccaacgaaccagctttgtttgatggcttagtacctgcaacagcacgt
cctgttttgcttggtattacgaaagctgctttggaaacgaattcattcttgtctgctgca
tcattccaagaaacaacgcgtgtcttgactgatgctgctatcagaggaaagaacgatcca
ttggtaggtttgaaagaaaacgttattattggtaagattattcctgctggaacaggtatg
gcagagtatcgtaaaattaagagtaaagtcgttggggaagttgttgcgcaaccagaagtt
gagcaagaaccaacgcctgatattcctaagttagatgatgttgctaagtcttttgaagaa
taa
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