Novilysobacter ciconiae: INQ41_00950
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Entry
INQ41_00950 CDS
T08092
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lcic
Novilysobacter ciconiae
Pathway
lcic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INQ41_00950 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcic03019
]
INQ41_00950 (rhlB)
Enzymes [BR:
lcic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
INQ41_00950 (rhlB)
Messenger RNA biogenesis [BR:
lcic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
INQ41_00950 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RhlB
ResIII
Motif
Other DBs
NCBI-ProteinID:
QOW19686
UniProt:
A0A7S6UG64
LinkDB
All DBs
Position
213069..214979
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AA seq
636 aa
AA seq
DB search
MTDRPSDKPLTDITFDSFDLHPRLLAGLELAGFTRCTPIQAMSLPVALKGGDVAGQAQTG
TGKTLAFLVATINRLLTKPALADRKPGDPRALILAPTRELAIQIHKDAVKLGPEVGLTFA
LVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEVCVLDEADRMFDLGF
IKDIRFLLRRMPACTERQTLLFSATLSHRVLELAYEHMNEPEKLVVESEYITASQVRQLL
YFPADEEKIPLLLGLLSRSEGARTMVFVNTKVWVERVARALEKGGYRVGVLSGDVPQKKR
ESLLAKFQKGQLEVLVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGD
AISFACERYAIGLPDIEAYIEQKIPSARVEPELLIPLPRPVREKVAGEEEESVGAIFKEA
REARAAEEERRGGGRSRSGEGGGRGSAGRRDRGPATPRRPRREHPQDSGAAPSPAAGDNA
ASAASTVPAQAATVTAASSSVAAAPGIDAGAGTGSDPARAPRKRRRRRGGRKTEGQPAEA
GQQAQGSTGQAKAPQAPSQPSHPSQPSVAAATAARPAGSAPPAQPKPAVPNGERKLHQVP
ANKAAPRPAPAPAVQSRPGLLGRIGKRLKSLVGGDS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccgcccgagcgacaagccacttaccgacatcacctttgactcctttgacctg
catccgcgcctgctggccgggctggagctggccggattcacccgctgcaccccgatccag
gcgatgagcctgcccgtcgcgctcaagggcggcgacgttgccggccaggcgcagaccggc
accggcaagaccctggcgttcctggtggcgaccatcaaccgcctgctgaccaagccggcc
ctggccgatcgcaagcccggcgatccgcgcgcgctgatcctcgcgccgacccgcgagctg
gcgatccagatccacaaagatgccgtcaagctgggccccgaggtcggactgaccttcgcc
ctggtctatggcggcgtggattacgacaagcagcgcgaactgctgcagcagggcgtggac
gtgatcatcgccactccgggccggctgatcgactacgtcaagcagcacaaggtggtgagc
ctgcacgcgtgcgaggtgtgcgtgctggacgaggccgaccggatgttcgacctgggcttc
atcaaggacatccgcttcttgctgcggcggatgccggcctgcaccgagcgccagaccctg
ctgttctcggccacgctcagccaccgcgttctggagctggcctacgagcacatgaacgag
ccggaaaagctggtggtggagtcggaatacatcaccgcctcgcaggtccgccagctgctg
tattttcccgccgacgaggagaagatcccgctgctgctgggcttgctgtcgcgcagcgaa
ggcgcgcgcacgatggtgttcgtcaacaccaaggtgtgggtcgagcgcgttgcgcgtgcg
ctggagaagggcggctaccgggtcggcgtgctctcgggcgacgtgccgcagaagaagcgc
gagtcgctgctggccaagttccagaagggccagctcgaagtcctggtcgccaccgacgtg
gccgcgcgtggcctgcacatcgacggcatcaagtacgtctacaactacgacctgcccttc
gacgccgaggactacgtccaccgcatcggccgtaccgcacggctgggcgaggagggcgac
gcgatcagcttcgcctgcgagcgctacgcgatcggcctgccggatatcgaggcctacatc
gaacagaagatccccagcgcccgcgtcgagcccgagttgctgataccgctgccgcggccg
gtgcgggagaaggtcgccggcgaagaagaggaaagcgtcggcgcgatcttcaaggaagcg
cgcgaggcgcgggcggccgaggaagagcgtcgtggcggcggtcgcagccgcagcggcgag
ggcggagggcgcggaagtgccggccgtcgcgatcgggggccggcgacgccgcgtcgtccg
cgcagggagcatccgcaggacagcggtgcggcgccgtctccagccgccggcgacaacgcc
gcgtccgccgcttccaccgtgccggcacaggccgcgaccgtcaccgccgcttcgagcagc
gtggcggcagcgccgggcatcgacgcgggtgccggcaccggcagcgatccggcgcgcgcg
ccgcgcaagcgtcgccggcgtcgcggcggccgcaagaccgaggggcagccggccgaggct
ggccagcaggcgcaaggatcgaccggccaggccaaggcgccgcaagccccgtcgcagccg
tcacacccatcgcagccatccgtcgctgctgccactgccgcccggccggctggctcggcc
ccgccggcacagcccaagccggcagtgcccaacggcgagcgcaagctgcaccaggtgccg
gccaacaaggccgcaccgcgtcccgcacccgcgccggccgtgcagtccaggcccggactg
ctgggtcgcatcggcaagcgcctgaaatcgctggtcggcggcgactcctga
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