Novilysobacter ciconiae: INQ41_05170
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Entry
INQ41_05170 CDS
T08092
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lcic
Novilysobacter ciconiae
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcic03016
]
INQ41_05170 (rnd)
Enzymes [BR:
lcic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
INQ41_05170 (rnd)
Transfer RNA biogenesis [BR:
lcic03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
INQ41_05170 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DUF7691
DUF742
Motif
Other DBs
NCBI-ProteinID:
QOW20410
UniProt:
A0A7S6UHI1
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All DBs
Position
complement(1112845..1113900)
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AA seq
351 aa
AA seq
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MSPAPGRIGVDTEFIRERTYWPKLALVQIALERDGQLEILLVDSMAPGINEALAAILTDT
TILKIMHSPSEDLVAFKHACDALPRPLFDTQLAASLTGVGGGMGYQKLVESITGVPLAKG
ETRSDWLRRPLSASQLEYAADDVRHLFELHDVLESLLEKQERSGWLAEDAERTLANAEID
GLERWPHLSLRGSQFLDPDAQRSAIRLLRWRDRYARETDRPRGWILDNELALLIAREQPT
NPEALQALLDGHPKAPRKLTGAIWDALHTPVGEEDGAPDARVAERRDKNRLRALQDAVAA
LSADLDLPAGVLASRKHLESLLDHGEWPDALAGWRQEVLEPVLTPLLEPKH
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgagtcctgcgcccgggcgcatcggggtggacaccgaattcattcgcgaacgcacctat
tggccgaaactggcgctggtgcagatcgcgctggagcgcgacggacagctcgagatcctg
ctggtggacagcatggcgccgggtatcaatgaagcgctcgcggcgatcctcaccgatacg
acgatcctgaagatcatgcacagccccagcgaggacctggtggcgttcaagcacgcgtgt
gatgcgctgccgcggccgcttttcgatacccagctggcggcctcgctgaccggggtgggc
ggcggcatgggttaccagaagctggtggaaagcatcaccggcgtgccgctggccaagggc
gagacacgctcggactggctgcgccgcccgctgtcggcatcgcaactggaatatgcggcc
gacgatgtccgccatctgttcgagctgcacgatgtgctggagagcctgctggaaaagcag
gagcgcagcggatggctcgccgaggacgcggagcgcacgctcgccaacgccgagatcgac
gggctggaacgctggccgcacctgtccctgcgcggctcgcagttcctggatcccgatgcc
caacgcagcgccatccgcctgctgcgctggcgcgaccggtatgcccgcgagaccgaccgc
ccgcggggctggatcctcgacaacgaactggcgctgctgatcgcgcgcgagcagccgacc
aaccccgaagcgctgcaggccctgctcgacggccatccaaaggcgccgcgcaaactgacc
ggcgccatctgggatgccttgcacacgcccgttggcgaggaggacggtgcgcccgacgcg
cgggtcgcggaaagacgcgacaagaaccgcctgcgcgcattgcaggatgccgttgctgcg
ctcagcgcggatctcgacctgccagccggtgtgctcgcctcgcgcaagcatctggaaagc
ctgcttgaccatggtgagtggcccgacgcgctcgccggctggcggcaggaagttctcgaa
ccggtattgacgccactgctggagccgaagcactag
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