Novilysobacter ciconiae: INQ41_06355
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Entry
INQ41_06355 CDS
T08092
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lcic
Novilysobacter ciconiae
Pathway
lcic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INQ41_06355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcic03019
]
INQ41_06355
03009 Ribosome biogenesis [BR:
lcic03009
]
INQ41_06355
Enzymes [BR:
lcic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
INQ41_06355
Messenger RNA biogenesis [BR:
lcic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
INQ41_06355
Ribosome biogenesis [BR:
lcic03009
]
Prokaryotic type
rRNA processing factors
INQ41_06355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QOW20815
UniProt:
A0A7S6UIE5
LinkDB
All DBs
Position
complement(1383162..1386458)
Genome browser
AA seq
1098 aa
AA seq
DB search
MLINATQAEELRVAIVDGQNLYDIDIEQPSQEQKKSNIYKGKITRLEPSLEAAFVEYGGD
RHGFLPMKEISRDYFAAGVDHNKAGLKELLREGQEVVVQVDKEERGNKGAALTTYISLAG
RYMVLMPNSPTAGGVSRRIEGEDRAELKRAMDALNIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQVWKSVADAALTKPAPFLIYQESRLIIRALRDYMRPDIGEVLVDTEEMYAEAREFV
EQVMPHNLRKLKHYTDDVPLFNRFQIESQIENAYERDVRLPSGGALVIDQTEALTAVDVN
SARATRGSDIEETAFNTNLEAAEEVARQMRLRDLAGLVVIDFIDMSSSKHQREVENRLQN
ALKQDRARVQVGRISRFGLLEMSRQRLRPSLGESSQLVCPRCEGHGRMRSVESLSLSILR
VSEEHAMKENTGQILVQAPVEIANYLLNEKRRAISEIERRHGTPIVIVADEHLQTPHYEV
SRLRDNELGEDSNRPSYHRGSQRKLPTHALTKANLNVPVIAAVTNVRPAQPAPLREPRQA
DVPAPVAPTPVVVAAAAPTHSVGMVDRIMRFFRGTPEPTTDTATERSGSARGRSNGTGQA
ERGERGERGDRQDRGGQRRGGGKQQGRDGGRRDDAQRGNGPSQDDRAASGNGRGPRQQRE
KQPRRQDETNVAAMDAAEKSTQRQPRQPRGDRSGRDVSAPQVDNADQPAVAAAVATAAAA
STGTERAAEKDHARAAQNTQPVESTAPGHGPAEDDNNPDGTSRRRRGRRGGRRRRRGGAD
AGSAPDHTSDNVLTDEASADEEGSGEAQTSGASTAVSRAQPEFDFDDVPESDHTQHEARK
AESRSGTQRAGVEPEAKAASAKNGTAAADATSQEPAAPKGPEADDGVETGESADSADSAE
SADAGDAAAPRARKPRAPRTPRQPRARKQTVAADEGSETHGSDAPAAQDSPDSDKAQSPD
SATPASEEPAPEPARADADAATPAERMPTAKVTAAKVQAPQVRANPGYITGENADDDSGD
APSALPAVVVAPPTVVRTETVSVEPAAEAVNARKDEQPRTAHLFDSDGPGSNNAAGQSAE
EKQKDPEAKDAADEKHNA
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgctgatcaacgcgacgcaggccgaagagctgcgcgtcgcgattgtcgacgggcagaac
ctgtacgacatcgatatcgagcaaccgtcgcaggaacagaaaaagtccaacatctacaag
ggcaagatcacccgcctggagccctcgctggaggcggcgttcgtcgaatacggcggtgat
cgacacggcttcctgccgatgaaggagatctcgcgcgactatttcgccgcgggcgtggac
cacaacaaggccggtctgaaggaactgctgcgcgaagggcaggaagtcgtggtccaggtg
gacaaggaagagcgcggcaacaagggcgcggcgctgaccacctacatctcgttggccggg
cgctacatggtgctgatgcccaactcccccaccgcgggcggcgtgtcgcgccggatcgag
ggcgaggaccgcgccgaactcaagcgtgcgatggatgcgctgaacatccccgacgacatg
ggcgtgatcatccgcaccgccggtgtcggccgtgatgccgaggaactgcagtgggacctg
gattacctgctgcaggtctggaagtcggtggccgacgcggcgctgaccaagcccgcgccg
ttcctgatctaccaggaaagccgcctgatcatccgcgccctgcgtgactacatgcgtccg
gacatcggcgaggtgctggttgacaccgaggagatgtacgccgaggcgcgcgagttcgtc
gagcaggtgatgccgcacaacctgcgcaagctcaagcactacaccgacgacgtgcccctg
ttcaaccgattccagatcgagtcgcagatcgagaacgcctacgagcgcgacgtgcgcctt
ccctcgggcggcgcgctggtcatcgaccagaccgaggcgctgaccgcggtcgacgtcaac
tcggcacgcgcgacgcgcggcagcgacatcgaggaaaccgcgttcaacaccaacctggag
gcggccgaggaagtcgcccgccagatgcgcctgcgcgacctggccggactggtggtgatc
gatttcatcgacatgtcctccagcaagcaccagcgcgaggtcgaaaaccgcctgcagaac
gcgctcaagcaggatcgcgcccgcgtccaggtcggccgtatttcccgcttcggcctgctg
gagatgagccggcagcggctgcgtccgagcctgggcgagtccagccagctggtctgcccg
cgctgcgaagggcatggccgcatgcgcagtgtcgagtccctgtcgctttctatcctgcgc
gtgagcgaagagcacgcgatgaaggagaacaccggacagatcctggtccaggcgccggtc
gagattgccaactatctgctcaacgagaagcgtcgcgcgatcagcgagatcgagcggcgc
cacggcacgccgatcgtcatcgtggccgacgagcacctgcagaccccgcattacgaagtc
agccggctgcgcgacaacgagctgggcgaagacagcaaccgtccgagctaccaccgcgga
agccagcgcaagctgccaacccacgcgctgaccaaggcgaacctcaatgttccggtcatc
gccgcggtgaccaatgtcaggccggcccagccggcgccgttgcgtgaaccgcgccaggct
gacgtgcccgcgcccgtcgcgccgaccccggtggtggtggcagctgctgcacccacccac
tcggtcggcatggtcgaccgcatcatgcggttcttccgcggcacccctgagccgacgacc
gatacggcgaccgagcgctcgggcagtgctcgtggccgttccaacggcactggccaggcc
gagcgcggcgagcgcggcgagcgcggtgaccgtcaggatcgcggcgggcagcgccgtggt
ggcggcaagcaacaaggccgcgacggcggacgccgtgacgacgcccagcgtggcaacggt
ccgtcccaggatgatcgcgccgcgtcgggcaatggacgcggaccgcgacagcagcgggaa
aagcagccgcgtcgccaggacgagacaaacgtggcggcaatggatgccgcggagaagtcg
acgcagcgccagccccgccagccccgcggtgatcgatccggtcgcgatgtcagcgctccg
caggtcgacaacgccgatcagccggcggtggcggccgcggttgccacggccgccgcggct
tcaacgggaaccgagcgcgccgcagaaaaggaccacgcacgcgcggcccagaacacgcag
ccggtggagagcacggctccgggccacggcccggccgaggacgacaacaatccggacggc
actagtcgccgtcgccgcggccgtcgtggtggacgtcgccgtcgccgtggtggcgccgac
gcgggttcggccccggatcacacgtccgacaacgtcctgaccgatgaagcttccgccgat
gaggaaggctcaggcgaggcgcagaccagtggcgcttcgacggcagtcagccgggcgcag
ccggagtttgattttgatgacgtgccggagtccgaccacacacagcacgaagcgcggaag
gcggagtcgaggtcgggcacgcagcgagcgggcgtagagcccgaggcgaaggcggcctcc
gcgaaaaacgggaccgcggccgccgacgccacctcgcaggaaccggcagcgccgaagggt
ccggaggccgacgacggtgtggagaccggcgaaagtgccgacagcgcggacagcgcagaa
agtgccgacgccggggacgctgccgcaccaagggcgcgcaagccacgcgcgccgaggacg
ccgcgtcagccgagggcccgcaagcagacggttgccgcggacgaaggcagcgagacccac
ggcagcgacgcgccggcggcgcaggacagtccggattcggacaaggctcagtcgcctgat
tcggcgaccccggcttcggaagaacccgcgccggagcccgcccgggcggatgcagacgcg
gccacgccggctgagaggatgccaactgcgaaggtcacggctgccaaggtgcaggcccct
caggtccgcgccaatcccggctacatcacgggcgagaacgccgacgatgactccggcgac
gcaccatcggcgctgccggcggtcgtagtcgctccgccaaccgttgtgcgaacggagacg
gtgtcggtggagcctgcagcggaagcggtgaatgcccgcaaggacgagcaaccgcggacg
gcccacctcttcgacagcgacggtcccggtagcaacaacgcggcaggccagagcgccgaa
gagaagcagaaggatccggaagcgaaggacgcggcggacgaaaagcacaacgcctga
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