Novilysobacter ciconiae: INQ41_08715
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Entry
INQ41_08715 CDS
T08092
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lcic
Novilysobacter ciconiae
Pathway
lcic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
INQ41_08715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcic03019
]
INQ41_08715
Enzymes [BR:
lcic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
INQ41_08715
Messenger RNA biogenesis [BR:
lcic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
INQ41_08715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
QOW18772
UniProt:
A0A7S6UEE0
LinkDB
All DBs
Position
complement(1912754..1914094)
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AA seq
446 aa
AA seq
DB search
MSFENLGLAPALLRALAEQGYTSPTPIQVQAIPLIMAGNDLLGGAQTGTGKTAAFGLPLL
NRLSKQTGPNGSRKPRALILVPTRELAVQVNDSLRSYAKHLRMNFCTLFGGAGMGPQVEN
LRRGVDVIVATPGRLIDHIERGTVKLDEIEVLVLDEADRMLDMGFLPAIKRILGRLPAER
QTLLFSATFESQLKQLALQFMRDPKQVQVATNNAIANTITHRAHPVDSGRKRDLLIDIIA
KRPGDQVLVFGRTKHGCNRLAEQLEAAGLRSVAIHGNKSQAQRQKALRDFKGNRARVLVA
TDVAARGLDIPDLPLVINFDLPMVAEDYVHRIGRTGRNGSTGEALSLVSHDEGGLLRQIQ
HVLKKDVEMVVVPGYEPSRPIRLDVAIPNPRNNAGAGRPPRNNSPRAAARPHAAAPRHAH
AGAPRQRSAGPGARGGRGSFRDGSSA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaaaacctcggccttgcgcctgccttgctgcgcgcgcttgccgaacagggc
tacaccagcccgaccccgatccaggtccaggccattccgttgatcatggccggcaacgac
ctgctcggcggcgcccagaccggcaccggcaagactgccgcgttcggcctgccgctcctc
aaccgcctgtccaagcagaccggccccaacggttcgcgcaagccgcgcgccctgatcctg
gtgccgacccgcgagctggccgtgcaggtcaacgacagcctgcgcagctatgcgaagcac
ctgcggatgaacttctgcacgctcttcggtggcgccggcatgggcccgcaggtcgagaac
ctgcgccgcggcgtcgacgtgatcgtcgccacgcccggccgcctgatcgaccacatcgag
cgcggtaccgtgaagctcgacgagatcgaggtgctggtgctggatgaggccgaccgcatg
ctcgacatgggcttcctgccggcgatcaagcgcatcctcggccgccttccggccgagcgc
cagacgctgctgttctcggcgacgttcgaatcccaactcaagcagcttgcgctgcagttc
atgcgcgatcccaagcaggtccaggtcgccaccaacaacgcgatcgccaacacgatcacc
caccgtgcccacccggtggacagcggccgcaagcgcgacctgctgatcgacatcatcgcc
aagcgccccggcgaccaggtgctggtgtttggtcgcaccaagcacggctgcaaccgtctg
gccgaacagctcgaggccgccggcctgcgctcggtggccatccatggcaacaagagccag
gcgcagcgccagaaagccctgcgcgacttcaagggcaaccgtgcccgcgtgctcgtggcg
accgacgtggcggcccgcggcctggacatccccgacctgccgctggtgatcaacttcgac
ctgccgatggtggccgaggactacgtgcaccggatcggccgtaccggccgcaacggttcc
accggtgaggcgctgtcgctggtctcccacgacgagggtggcctcttgcgccagatccag
cacgtgctgaagaaggacgtggagatggtggtcgtgccgggttacgagcccagccgcccg
atacgcctggacgtggccatcccgaacccgcgcaacaacgccggtgccggccgtccgccg
cgcaacaacagcccgcgcgcggccgcacgtccgcacgcggcagcgccgcggcatgcccat
gcaggcgcgccgcgccagcgctcggccggtccaggcgcccgcggtggccgtggctcgttc
cgcgacggctccagtgcctga
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