Novilysobacter ciconiae: INQ41_09425
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Entry
INQ41_09425 CDS
T08092
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lcic
Novilysobacter ciconiae
Pathway
lcic03030
DNA replication
lcic03430
Mismatch repair
lcic03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
INQ41_09425 (dnaE)
03430 Mismatch repair
INQ41_09425 (dnaE)
03440 Homologous recombination
INQ41_09425 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcic03032
]
INQ41_09425 (dnaE)
03400 DNA repair and recombination proteins [BR:
lcic03400
]
INQ41_09425 (dnaE)
Enzymes [BR:
lcic01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
INQ41_09425 (dnaE)
DNA replication proteins [BR:
lcic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
INQ41_09425 (dnaE)
DNA repair and recombination proteins [BR:
lcic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
INQ41_09425 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QOW18895
UniProt:
A0A7S6UEN6
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All DBs
Position
2103120..2106695
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AA seq
1191 aa
AA seq
DB search
MPARFTHLHLHSEFSLVDSTIRVNELVKRCVMLGQPAVALTDVNNLFAAVKFYRAAEQAG
VKPILGADVGLADGNEASSRLTLLCRDHTGYLTLSRLLSRMWMEGHRTDSVALRPEWLRE
DNEGLFALAGRQSLAGRMATSQRPELAEAWLADWQGIFDDRLHLELTRTGRADEPVFNEF
AIHASAKRGLPLIASNDVRFLDRDGFDAHEARVCISTGRVLDDPKRPKEYSAEQYLKSSE
EMAELFADVPDAIDNALALATRCNVEMQLGTYYLPAFPVPDDHTIESWLRSQAHDGLDAR
LQKVLQVEGRLANDMTRQDYEDRLDTELGVILSMGFPGYFLIVADFINWGKEQGIPVGPG
RGSGAGSLVAWALGITDLDPLPYDLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARK
YGRDRVSQIITYGTMAAKAVVRDCGRVLGHPYGFVDGIAKLIPMTLGVSLRDALGESEAA
KKNPELASGDLIARYHSEDDVRDLLDLALSLENLTRNAGRHAGGVVIAPSPLSDFCPLFA
EHDGEGRGKTPVTQFDKDDVESVGLVKFDFLGLRTLTIIDWAVKAINVRRARSGEEPLDI
TTLPLDDKATYELFARGEGVAVFQFESRGMRELLKRARPDTFEDIIALAALFRPGPLGSG
MDKDWVDRKHGVAEVSYPHPSLEPVLGPTYGVIVYQEQVMQIAQVMAGYSLGGADLLRRA
MGKKKPEEMAKERAKFEAGCLANGIPAKVASPIFDLMEKFAEYGFNKSHSAAYALVAYQT
AWLKVHYPAEFMAAVLSSDMDNTEKVTGFLDECRAMNLQVLPPDVDASAYMFEAVAPDTD
AAPADADPKPPVGTIRYGLGAVKGVGHGACDAIVQARRAGPFADLLDFCKRVEGGKLNRR
ALEALTRAGALDKLGKNRASLMLQLPEVVRATDQLAREREAGQVSLFGGGDASPALHIEL
RETDEFPLGQLLAGERETLGHYLSGHPFDPYRDELLDLIGHDLGALERIWESRPESARSG
WRPELDTVVAGQVVALRKKGDSQMFVQIEDGNGRLEVAFFSETYTDFAPLLTRDRLLVIK
GGLREDAFSGGFALKAERCWDYNQVCADYAKRLSLRLDLQVPGTWQRVDALLARHRPGGA
RVRLDLLLPAAAGMVDLPAAGSVRVDAELAGLLRAEPGVRAVKLTLDRPWG
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgccagctcgcttcacccacctgcacctgcacagcgaattctcgctcgtcgactccacc
atccgggtcaacgagctggtcaaacgctgcgtgatgcttggccagcccgcggtcgcactg
accgacgtcaacaacctgtttgccgcggtgaagttctaccgcgccgcggaacaggccggg
gtcaagccgatcctgggcgcggacgtcggcctggccgatggcaacgaggcgagctcgcgc
ctgaccctgctgtgccgcgaccacaccggttacctgaccctgtcgcgcctgctcagccgg
atgtggatggaaggccaccgcaccgacagcgtcgcgctgcgcccggaatggctgcgcgag
gacaacgaaggcctgttcgcgctggcgggacgacagagcctcgccgggcgcatggcgacc
tcgcagcgaccggaattggccgaggcgtggctggcggactggcagggcatcttcgatgac
cgcctgcatctggagctgacccggaccgggcgcgccgacgagccggtgttcaacgaattc
gcgatccacgcctcggccaagcgcggcctgccgctgatcgcgagcaacgatgtgcgcttc
cttgaccgcgacggcttcgatgcccacgaagcccgcgtctgcatctccaccggccgcgtg
ctcgacgaccccaagcggccgaaggagtacagcgccgagcagtacctgaagtcctcggaa
gagatggccgagctgttcgccgatgtcccggatgcgatcgacaacgcgctcgcgctggcg
acccgctgcaacgtcgagatgcagctgggcacctactacctgcccgcgttcccggtgccc
gacgaccacaccatcgagtcctggctgcgcagccaggcgcacgacgggctggacgcgcgg
ctgcagaaggtgctgcaggtcgagggccggctcgcaaacgacatgacccggcaggactac
gaggaccgcctggacaccgagctgggcgtcatcctgtcgatgggtttccccggctacttc
ctgatcgttgccgacttcatcaactggggcaaggaacagggcatcccggtcgggccgggg
cgcggttcgggtgccggttcgctggtggcctgggcgctgggcatcaccgacctggatccg
ctgccctacgacctgctgttcgagcgcttcctgaatccggaacgggtgtcgatgcccgac
ttcgacatcgacttctgcatggaccgccgcgacgaggtgatcgactacgtcgcgcgcaag
tacggccgcgaccgggtcagccagatcatcacctacggcaccatggccgccaaggccgtg
gtgcgcgactgcgggcgcgtgctgggccatccctatggcttcgtcgacggcatcgccaag
ctgatcccgatgaccctgggcgtgagcctgcgcgatgcgctgggcgagtcggaggcggcg
aagaagaaccccgagctggcatccggcgacctcatcgcgcgctaccactccgaggacgat
gtccgcgacctgctcgacctcgcgctcagtctggaaaacctgacccgcaacgccggtcgc
catgccggcggcgtggtgatcgcgccctcgccgctgagcgacttctgcccgctgttcgcc
gagcacgatggcgagggacgcggcaagaccccggtgacccagttcgacaaggacgacgtg
gaatccgtgggtctggtgaagttcgacttcctcggcctgcgcacgctgacgatcatcgac
tgggcggtcaaggcgatcaacgtgcgccgcgccagatccggcgaggaaccgctggacatc
acgaccctgccgctggacgacaaggccacctacgaactgttcgcccgcggcgaaggcgtg
gcggtgttccagttcgagtcgcgcggcatgcgcgagctgctcaagcgcgcgcgcccggac
accttcgaagacatcatcgcgctggccgcgctgttccggcccggcccgctgggctcgggg
atggacaaggactgggtcgaccgcaagcacggcgtggccgaggtcagctacccgcatccg
tcgctcgagccggtgctgggcccgacctacggcgtgatcgtgtaccaggaacaggtgatg
cagatcgcccaggtgatggcgggctattcgctcggcggcgccgacctgctgcgtcgcgcg
atgggcaagaagaagcctgaggaaatggccaaggagcgggccaagttcgaggccggctgc
ctggccaacggtatcccggccaaggtcgccagcccgatcttcgacctgatggagaagttc
gccgagtacggcttcaacaagtcgcactcggcggcctatgccttggtcgcgtaccagacc
gcctggctgaaggtgcactacccggccgagttcatggccgccgtgctgtcgtccgacatg
gacaacaccgagaaggtcaccggcttcctggacgagtgccgggcgatgaacctgcaggtg
ttgcccccggacgtggacgcctcggcgtacatgttcgaggcggtggcgccggacactgac
gctgcaccggccgacgccgatcccaagccgccggttggcacgatccgctacggcctgggc
gcggtgaagggcgtgggtcacggcgcgtgcgatgcgatcgtgcaggcgcgccgcgccggc
cccttcgccgacctgctggatttctgcaagcgcgtggaaggcggcaagctcaaccgccgc
gcgctggaagcgctgacccgcgccggcgccctggacaagctgggaaagaaccgcgccagc
ctgatgttgcaactgcctgaggtggtccgcgcgaccgaccagctggcccgcgaacgcgag
gccgggcaggtcagcctgttcggcggtggcgacgccagtccggcgctgcacatcgagctg
cgcgagaccgacgaattcccgctgggccagctgctggccggcgaacgcgagaccctgggc
cactacctcagcgggcaccccttcgatccctatcgcgacgagttgctggacctgatcggc
cacgatctgggcgcgctggagcggatctgggagtcgcgcccggaaagcgcgcgcagcggc
tggcgcccggagctggacacggtcgtcgccggccaggtggtcgcgctgcgcaagaagggc
gacagtcagatgttcgtgcagatcgaggacggcaacggccggctcgaagtcgcgttcttc
tccgagacctacaccgacttcgcgccgctgctgacccgcgatcgcctgctggtgatcaag
ggcggcctgcgcgaggacgccttcagcggcggttttgcgctcaaggccgagcgctgctgg
gactacaaccaggtctgcgccgattacgccaaacggctgtcgctgcggctggacctgcag
gtgcccggcacctggcagcgggtggatgcgctgctggcccgtcatcgtcccggcggcgcc
agggtccggcttgatctcctgctgcccgctgccgccggcatggtcgatctgccggccgcc
ggatcggtgcgggtggacgcggaacttgccggcctgctccgcgccgaacccggcgtgcgc
gcggtcaagctcacgctggaccggccttggggctga
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