Novilysobacter ciconiae: INQ41_09615
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Entry
INQ41_09615 CDS
T08092
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lcic
Novilysobacter ciconiae
Brite
KEGG Orthology (KO) [BR:
lcic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcic03009
]
INQ41_09615 (rlmD)
Enzymes [BR:
lcic01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
INQ41_09615 (rlmD)
Ribosome biogenesis [BR:
lcic03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
INQ41_09615 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
MTS
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_11
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_23
UPF0020
Methyltransf_15
CMAS
TRAM
Ubie_methyltran
PrmA
zf-C3HC4_3
Methyltransf_32
MetW
Motif
Other DBs
NCBI-ProteinID:
QOW20887
UniProt:
A0A7S6UIH0
LinkDB
All DBs
Position
complement(2151403..2152731)
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AA seq
442 aa
AA seq
DB search
MARLDKTPFEVDIHALSPDGRGVARLAGDVTMLVAGALPGERVLATRTGRRRGVHEARTV
EVLQAAADRVTPRCGHFGTCGGCALQHLDGSSQILAKQAVLLDHLRDAAGIVPPRLLEPL
VDAAWGYRRKGRLSVRRVEKKGKTLVGFRETDPRFVAEIHHCHTVIPEVGTKVAALAELV
DSLHARSDIPQIEFIAGDATAQFNGVALVIRHMAPLSTDDQASLVAFGQQHGFAIFLQPG
GVDSVHPLWPPDPALSFRMPQWNLEFAFRPLDFIQVNAGLNERMIQLAMDLLDVQPGDRV
LDLFCGLGNFTLPLARRVREVVGVEGDAGLVERARDNAQRNGIDNARFHAADLSLDLSGQ
PWMEQRFDKLLLDPPRSGAAFVLEHLPLDQFQRIVYVSCHPASLARDTALLAARGWKLQV
AGVMDMFPQTAHVESIAMFEKA
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgtctcgacaaaaccccgtttgaagtggacatccacgccctgtctcccgacggt
cgcggcgtggcccgccttgccggtgacgtgacgatgctggtggcgggcgcgctgcccggc
gagcgcgtgcttgcgacccgcaccggacgccggcgcggcgtccacgaggcacgcaccgtt
gaggtattgcaggcggcggcggaccgggtgacgccgcggtgcgggcacttcggcacgtgc
ggtggctgcgcgctgcagcacctcgacggcagcagccagatccttgccaagcaggccgtc
cttctggatcacctgcgcgatgccgcgggcatcgtgccgccccgactgctcgagccgctg
gtggatgccgcctggggctatcgacgcaaaggccgcttatcggtgcggcgggtggagaag
aaggggaaaacgctggttggattccgcgagaccgacccgcgcttcgtcgccgagatccac
cattgccacaccgtcatccccgaggtgggcacgaaggtcgcggcactggccgagctggtc
gacagcctgcacgcacgcagcgacattccacagatcgagttcatcgccggcgatgccacc
gcgcagttcaatggcgtggcgctggtcatccgccacatggcgccgctgtcgaccgatgac
caggcatcgctggtcgccttcggccagcagcacggctttgcgatcttcctccagcccggc
ggtgtcgacagcgtccatcccctgtggccgcctgatccggcgctgtcgttccggatgccg
caatggaacctcgagttcgcgttccgtccgcttgatttcatccaggtcaacgcggggctc
aacgaacgcatgatccagctggcgatggacctgctggacgtgcagccgggcgatcgcgtg
ctcgacctgttctgcgggctgggcaacttcaccctgccgctggcgcgccgcgtacgcgag
gtggtgggggtggaaggtgatgccggcctggtggagcgcgcgcgggacaacgcgcaacgc
aatggcatcgacaatgcccgtttccacgccgccgacctgtcgctggacctgtccggccag
ccgtggatggagcagcgctttgacaagctgctgctggatccgccgcgctcgggtgcggcg
ttcgtgcttgagcacctgccgctggaccagttccagcgcatcgtctacgtcagctgccat
ccggcctcgctggcgcgcgacaccgcgttgctggccgcgcgtggctggaagctgcaggtg
gcgggagtgatggacatgttcccgcagaccgcccacgtggagtccattgcgatgttcgag
aaggcctga
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