Legionella cherrii: NCTC11976_00563
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Entry
NCTC11976_00563 CDS
T06506
Symbol
lidP
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lcj
Legionella cherrii
Pathway
lcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11976_00563 (lidP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcj03019
]
NCTC11976_00563 (lidP)
03016 Transfer RNA biogenesis [BR:
lcj03016
]
NCTC11976_00563 (lidP)
Enzymes [BR:
lcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC11976_00563 (lidP)
Messenger RNA biogenesis [BR:
lcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11976_00563 (lidP)
Transfer RNA biogenesis [BR:
lcj03016
]
Prokaryotic type
tRNA degradation factors
NCTC11976_00563 (lidP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
CSD
Motif
Other DBs
NCBI-ProteinID:
VEB33888
UniProt:
A0A0W0SC87
LinkDB
All DBs
Position
1:complement(633896..636073)
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AA seq
725 aa
AA seq
DB search
MSKKTKDPFYKRESEKYSDPVPSREFIMDVLNEYGKPMSRNQLFDRLQIKDERKQESMGF
RLKAMLRDGQIMQDRRGRFCLMQRINLSRGTVQGHPDGFGFFIPDDGSEDMFLSAKEMRA
VMHGDVVLAYQVGVDRKGRPEAKIHEVIEHANATIVGRFFTDHGVSFVLPDSKHLTQDIS
IPQELVNGAKNDQIVLVELIAFPSKRTQAIGKVIHVLGEHMAPGMEIQVALYAHGIPFEW
PEDVSTEVAKIPQHVTEEQIKDRTDLRGLPFVTIDGEDAKDFDDAVYCYKKPKGGFQLYV
AIADVSNYVMHDSALDKEAARRGNSVYFPGKVIPMLPEALSNGLCSLNPHVDRLCMVAEM
AISSEGKISRSRFYRAVIHSHARLTYTQVGSWLEQDAADEQHASLWPTLQSLHDLYHVLL
VTRKLRGAMDFETTETRIEFDENKKIQCIVPVIRNDAHKLIEECMLAANVATARFLEKAE
IPTLYRVHAAPEEDKITALRQFLGELGLQLSGGKKPGPKDFQRTMNAIEGRPDKHLIETV
MLRSLKQAHYVEANEGHFGLAYSAYTHFTSPIRRYPDLLIHRAIGHLLDKKPIYEFDYTH
EDMNRLGKHASMTERRADEATREVVAWLKCEYMQDKLGQVFNGRISAVTGFGIFVELDEI
YVEGLVHVTSLKNDYYTFDSVKHRLIGTRGGQVYRLGDKMTVLVARVDLDERKIDFEPVE
ETTES
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaaaaaacaaaagatcccttttataaacgggaaagtgaaaaatactccgatcct
gttcccagccgcgaattcattatggacgttcttaatgaatacggtaagcctatgtcgcgc
aatcaattattcgatagattacaaataaaagatgaacgcaaacaagagtccatgggattt
agactcaaagcaatgttgcgcgatggacaaattatgcaagaccggcgcgggcgattttgt
ttaatgcaacgaattaacctatcgcgcggcaccgttcaggggcatccagatggttttggc
ttttttatccctgatgacggatcggaagatatgtttttgtctgctaaagaaatgcgggcg
gtcatgcatggagacgtggtccttgcctatcaggttggcgtcgatcgtaaaggcaggcct
gaggcgaagatccacgaagtgattgagcatgctaatgcgactattgtgggtaggtttttt
acagatcatggtgtgagtttcgtcttgccggatagcaaacatttaactcaggatatttct
attccgcaagaactggtgaatggggcaaaaaatgatcaaattgttttggtcgaattaatt
gcctttccaagtaaacgaacccaagctataggcaaagtaatccatgtcttgggcgagcat
atggctcccggtatggaaattcaagtcgcactttatgctcacggaattccttttgaatgg
ccggaggatgttagcactgaagtagcgaaaatcccacagcatgtcaccgaagaacaaatt
aaggatcgtactgatttgcgtgggctgccctttgtgacgattgatggtgaagatgctaaa
gattttgatgatgcagtttattgttataaaaagcccaaaggcggtttccaattatatgtc
gcaatcgctgatgtcagcaattatgtaatgcacgattcggcattggataaagaagcagcg
cgccgtggtaactcggtttatttccctggcaaagtaattcccatgttaccggaagcttta
tccaatggtttatgttcgctaaatcctcatgtcgaccggctgtgtatggttgctgaaatg
gcgatcagtagtgaaggtaaaatatcgcgctctcgtttttatcgcgccgtcattcattca
catgctcgattaacttatacccaagtgggctcttggcttgagcaggacgctgcggatgaa
caacatgcctctttatggcctacattgcagtctcttcatgatttgtatcatgttttatta
gttacccgcaaacttcgcggcgctatggatttcgaaaccacggaaacgcgcatcgaattt
gatgaaaataaaaaaattcaatgtatcgttccagtgattcgcaatgatgcccataaattg
attgaagaatgtatgttggccgcgaatgttgccaccgcacgatttttagaaaaagctgaa
atccctacactttatcgagtgcatgcggcgccagaagaagacaaaattaccgccttaaga
cagtttttaggtgagttgggattgcaactgagtggtggaaaaaaacctgggcctaaagat
tttcagcgtactatgaatgccattgagggtcgaccggacaaacatctgattgaaacggta
atgcttcgttctctgaaacaagcacactatgttgaggcgaatgaaggacattttggtctg
gcttattctgcctacactcattttacttcacccatcagacgttatccggatttgttaatt
catcgcgccattggtcatttattggataagaagccaatttatgagtttgattatacccat
gaggatatgaatcgcttaggtaaacatgcttcgatgaccgaacgacgcgctgatgaggcg
acccgcgaagtagttgcttggttaaaatgtgagtacatgcaagataaattggggcaagta
ttcaatgggcgaatttctgcagtaacaggttttggaattttcgtagaacttgatgaaatt
tatgttgaaggtctggtccatgtgacttctttaaaaaatgattattatacatttgattct
gtaaagcatcgcctaattggaacacgaggtggacaggtgtatcgtttgggagacaagatg
acggtattagtcgcccgtgtggatttggatgagcgtaaaattgattttgagccagtagag
gaaaccacagagtcatga
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