Legionella cherrii: NCTC11976_01293
Help
Entry
NCTC11976_01293 CDS
T06506
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcj
Legionella cherrii
Pathway
lcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11976_01293 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcj03019
]
NCTC11976_01293 (deaD)
03009 Ribosome biogenesis [BR:
lcj03009
]
NCTC11976_01293 (deaD)
Enzymes [BR:
lcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC11976_01293 (deaD)
Messenger RNA biogenesis [BR:
lcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC11976_01293 (deaD)
Ribosome biogenesis [BR:
lcj03009
]
Prokaryotic type
rRNA helicases
NCTC11976_01293 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_C_2
NMT1_2
Cas3-like_C_2
adh_short
AMP-binding_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VEB35313
UniProt:
A0A0W0SGL4
LinkDB
All DBs
Position
1:1445861..1447567
Genome browser
AA seq
568 aa
AA seq
DB search
MSQEITSFASFNFSDALNKALEDMKFTTPSPIQVQTIPLLMEGRDAIALAQTGTGKTAAF
ALPILQNLSPNVQGTQALILAPTRELAIQVAEQFELLSAKQRGVSVAVLCGGQDYGRQLK
QLKAGAQVVVGTPGRILDHIDRRTLNLDNLRTFILDEADEMLRMGFIEDIETIMAKLPEK
KQIGLFSATMPHRIRQIANTYLHDPVSIEIRAETATVKSIEQRFLFASGHQKPDALLRVL
AVEEYQGVIVFVRTKSSTEEVAELLQQQGLRAMAIHGDITQALRERIIAQFRQGAIDILV
ATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTGRAGRSGVAVLFVTPKESRLISSI
ERHTRQRIAKVAVPNDHMIQTARQQRFMANITARLEHANLPSYKRIIEEYIKENNVSAVD
VAATLALLLNKDLPWQKEQVLPKSPRPAKEGRAERGGKFERSRTEERKGFAADKKGLRDG
RKKFNDEVVAQDLFRIDVGKIHGVKPGNIVGAIANEAGLQSKHITGLKIHDDHSTVRLPK
GMPKEVMSDLTKAWVCGRQLNITLIGSA
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaagaaataacaagcttcgcgtcctttaatttttcagatgctttaaacaaagca
ctagaggatatgaagtttactactccttctccaattcaagtacaaacgatacctttactg
atggaaggtcgagatgcgattgctttggcgcaaacaggaacaggaaaaacggctgctttt
gctttgcctatattgcaaaatttatctcctaatgtgcaaggtactcaagctttaattttg
gctccaactcgcgaattggcgattcaagttgccgaacagtttgaattattgagtgccaaa
caacggggtgttagtgttgctgttttatgtggtggtcaagattatggccgtcaattaaag
caattaaaagcaggtgctcaagttgtggtaggaactcctggccgtattttagatcatatc
gacagacgtactttaaatctcgataatttgcgcacattcattcttgatgaagcagatgaa
atgttgcgtatgggctttattgaagatattgaaaccatcatggcaaaactgcctgaaaag
aaacaaataggtctgttttcagcaactatgcctcatcgtattcgacaaattgccaacact
tatttgcatgatcctgtgtccatcgaaatacgagcagaaaccgctactgtaaaaagtatc
gagcaacgatttttatttgcttctggacaccaaaaacctgatgctctcttacgtgtattg
gctgtagaagaatatcaaggagtgattgtattcgtacgtactaaaagcagtaccgaagaa
gttgccgaactcttgcaacaacaaggcctgcgggctatggccatacatggtgatattacc
caagcattacgtgagcggattattgcgcaattcagacaaggagcgattgatatcctggtc
gctacggatgtggctgctcgcggtttggatgtggagcgagtaacccacgtaataaactat
gatttaccgcatgataatgaaacctatgttcatcgcattggaagaacagggagagctggg
cgttccggggtagctgttttatttgtaacccccaaagaatcgcgtttaattagcagcatt
gagcggcatacgcggcaacgtattgctaaagtggcggtgcccaatgaccatatgattcaa
actgcacgtcaacaacgatttatggcaaatatcacagcacgtttagaacatgcaaacttg
ccttcatacaaacgaattatcgaagaatacattaaagaaaataatgtttctgcagttgat
gttgcggccacacttgctttgttgttaaacaaggatttgccttggcaaaaagagcaagta
ttacctaaatcaccccgtccggctaaagaaggtcgtgctgagcgtggcggcaaatttgaa
cgttctcgaacagaggagcgaaaaggttttgctgcggacaagaaagggttgcgtgatgga
cgtaaaaaatttaatgatgaagtggtggcacaggacttattccgaatcgatgtcggtaaa
attcacggtgtgaaaccaggtaatattgtaggtgccattgcgaatgaggcgggtttacaa
agtaaacatattactggtcttaaaattcatgacgatcattcaacggtgcgcctgcctaaa
ggcatgcccaaagaggtaatgagtgatttaactaaagcttgggtttgtggacgtcagctc
aatattactttaattggcagtgcataa
DBGET
integrated database retrieval system
