Legionella cherrii: NCTC11976_01331
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Entry
NCTC11976_01331 CDS
T06506
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lcj
Legionella cherrii
Pathway
lcj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC11976_01331 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcj03019
]
NCTC11976_01331 (rne)
03009 Ribosome biogenesis [BR:
lcj03009
]
NCTC11976_01331 (rne)
Enzymes [BR:
lcj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NCTC11976_01331 (rne)
Messenger RNA biogenesis [BR:
lcj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC11976_01331 (rne)
Ribosome biogenesis [BR:
lcj03009
]
Prokaryotic type
rRNA processing factors
NCTC11976_01331 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
VEB35389
UniProt:
A0ABY6T6X0
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All DBs
Position
1:complement(1485597..1487540)
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AA seq
647 aa
AA seq
DB search
MEKMLINAMQTEEVRVALVKDRYLFDLDIECPGEVKKKGNIYKATVTRREPSLDAVFVEY
GSKRQGFLPLKEIAPEYLSKNPEEFGDEKPPITSLIREGQELLVQVDKEERGSKGAALTT
YITLAGCYLVLMPNNPRSGGISRRIEGEERDELRETLNALTLPEDMGLIIRTAGVGKSQE
ELQDDLDMLCNQWQSIKQAYNSELAPSLIHQEGDVIIRSIRDNLRKSISEIIIDDQISYI
KAKQYIERVKPEFLPNLKLYNSSIPLFNFYQIESQIETAFQRQVMLPSGGALVIDRTEAL
VSIDVNSAKATGGSDIEATAFNTNIEAADEIARQLRLRDLGGLVVIDFIDMSSSKNQRDV
ENRLKEALQADRARIQVGRISRFGLLEMSRQRLRLSLGESAQEVCPRCEGRGTVRNIQSH
GLAITRLIEEEALKEKTAEIQVQLPAEMATFIMNEKRNFIKDIEKRHSVSVMIIANPYMH
LPQYSITRLKEDNVGKSKKPSYSLIQQPELHVPGSEVDSSLRDEPAVKPLTEHQPVKSAQ
TSFIKRLWSSLFGGHADTSVSVPQSQAKRAPGRHQAQAKTSKGSGGDRRSQNRRRRPNGN
QQQRASAGNNPTASNQNRRRTGPQQQGNIKAVVKADGQKKRETAAKE
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaatgttaatcaatgcaatgcaaactgaggaagttcgtgttgcactagttaaa
gatcgttatttatttgacctggatattgaatgtcccggtgaagtgaaaaaaaagggtaat
atttataaagcaaccgtcaccagacgagaaccgagtctcgatgcagttttcgtagagtat
ggttctaaacgtcaaggcttcttgccccttaaggaaatcgcacctgaatatttaagcaaa
aatcctgaagaatttggcgatgaaaaaccacccatcacttccttaatccgagaaggccag
gaattgttggttcaggttgacaaagaagaacgtggcagcaaaggagccgcgctaacaacc
tatattactttagcaggttgttacctagttctcatgcctaataatcctcgctcaggcggt
atctccagacgtatcgaaggtgaagagcgtgacgaactgcgagagacactcaatgcattg
actttacctgaagacatgggacttattatccgtacggcgggtgtaggcaaaagccaagaa
gaattacaagatgacctggatatgctgtgcaatcaatggcaatccatcaaacaagcttat
aattcggaacttgccccttcgttgattcatcaagaaggtgatgtcatcattcgttctatt
cgtgataatttacgtaagtccatcagcgaaatcattatcgatgatcagatttcttacatt
aaagccaagcaatatattgagcgagtaaaaccagaattcttacctaacttgaagctctac
aacagcagcatccctctgtttaacttctatcaaattgaaagtcagatagaaactgcattc
cagcgccaagtgatgttgccgtctggaggtgctttggtgatcgacagaaccgaagctctg
gtttcaattgatgtcaactcagctaaagcaacgggtggatcagatatcgaagcaactgca
ttcaatacaaatattgaagcagccgacgaaatcgctcgccagttacgtctacgtgatttg
ggtggtttagttgttatcgatttcattgatatgagctccagtaaaaatcaacgggatgtc
gaaaatcgcctgaaagaagcattgcaagcggatagagcacgtattcaagtcggacgtatt
tcccgctttggtcttttggaaatgtcgcgtcaacgtctgagattatcactaggggaaagt
gctcaggaggtgtgtccacgttgtgaaggacgaggtacggttcgtaacattcagtctcac
gggttggcaattacacgtctcattgaagaagaagcattaaaggaaaaaaccgctgaaatc
caagtacagcttcctgcagaaatggcaaccttcattatgaatgagaagcgtaatttcatt
aaagacattgagaaaaggcatagtgtttcagtaatgattatcgccaatccttacatgcac
ttaccacagtactcaatcactcgtctgaaagaagataatgtaggtaaatcgaaaaagcct
agttattctctaatccaacagcctgaattacatgttcccggtagtgaggttgatagttct
ttacgagatgaacctgcagtcaaaccattaacagaacatcaaccggtaaaaagcgctcaa
accagctttatcaagcgcttatggtccagtttatttggtggacatgcagacacttcggtt
tcagtgccacaaagccaggctaaaagagcaccaggccgtcatcaagctcaggcaaaaacg
tctaaaggttctggtggtgaccgcagatcgcaaaatagaagacgtcggcccaatggtaac
caacaacaaagagccagtgcaggtaataatccaactgcttcaaaccagaatcgtagaaga
actggaccacagcaacaaggaaacatcaaagcagttgttaaagcagatggccagaaaaaa
agagagaccgcagcaaaagaataa
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