Legionella cherrii: NCTC11976_01492
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Entry
NCTC11976_01492 CDS
T06506
Symbol
rtcB
Name
(GenBank) replication factor C subunit (activator I)
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lcj
Legionella cherrii
Brite
KEGG Orthology (KO) [BR:
lcj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcj03016
]
NCTC11976_01492 (rtcB)
Enzymes [BR:
lcj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC11976_01492 (rtcB)
Transfer RNA biogenesis [BR:
lcj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC11976_01492 (rtcB)
Prokaryotic type
tRNA splicing ligases
NCTC11976_01492 (rtcB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
VEB35703
UniProt:
A0ABY6T6S0
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All DBs
Position
1:1640228..1641658
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AA seq
476 aa
AA seq
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MDLNLLEKISDFEWRIPQHGKMRVPGIIFASEELILNMDMKVYEQVTNVATLPGIVRGSY
AMPDAHWGYGFPIGGVAAFDPDNEGVVSAGGVGFDISCGVRLLSTGFKREEFEPYKEQLA
DALFAHIPAGVGSKSRINLTMNQMDDMLHGGAVWAVKQGYGEKEDLERIEDYGRVEGALP
EYVSEHAKKRQKNEMGTLGSGNHYLEIQEVRKIYCEQTAAAFGLSRGDVVVSIHCGSRGL
GHQIGTDFLRSMFIHAEQHGIQLVDRELACAPIRSSMGEHYLGAMRSGINCALANREIIT
HFMREVFQNEMPGTQIRLIYDVSHNTCKEETHQIEGKSKRLFVHRKGATRAFGPGHPELT
KAFRHVGQPVIIGGSMGTASYVLVGTENSENKSFGSACHGAGRAMSRHQASKKWRGSEII
EQLAQQGILIRSSSYRGVAEEAPEAYKNVDLVVDAAQASGLTKKVARLVPIVCVKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggacttgaacctattagaaaaaatcagtgattttgaatggcgaattccccaacatggg
aagatgcgtgtaccggggattatttttgcctcagaagagttaattctcaatatggatatg
aaagtctatgaacaagttacgaatgtagctactttacccggaattgttcgcggctcctat
gcgatgcctgatgcacattggggatatgggtttcccattgggggagttgcagcatttgat
cccgataatgagggtgttgtctcagcagggggtgttggttttgatatttcttgtggggtc
aggctcttatctaccgggtttaagcgcgaagagtttgaaccctataaagagcaacttgca
gatgctctatttgcccatattccagcgggtgtaggcagtaaaagtcgtattaatctcacc
atgaatcaaatggatgacatgttgcatggcggtgcagtttgggcagtaaagcagggctat
ggcgaaaaagaggatttagaacgaattgaagattatggtcgcgtagaaggtgccttgcct
gagtatgtttcagaacatgcaaaaaaacgtcaaaaaaatgaaatgggtaccttgggctct
ggtaatcactacttggagattcaggaggtacgcaaaatatattgcgaacagactgctgca
gcattcggtttatcccgaggggatgtggttgtaagtatccattgtggctcacgtggcctt
ggtcatcaaataggaactgattttctacgttctatgttcatacacgcagaacagcatggc
atccaactcgttgaccgtgaattagcttgtgctcccattcgctcctctatgggggaacat
tatttaggcgctatgcgttcaggaattaattgtgcgctggctaatcgtgaaataattact
cattttatgcgtgaagtatttcagaatgaaatgccaggaacgcaaataagactgatttat
gatgtatcccataacacctgtaaggaagaaacccatcagatcgaaggaaaatccaagcgc
ttatttgttcaccgcaaaggggcgacgcgagcttttggaccaggccatcctgaattaaca
aaggcgtttcgtcatgtaggacaacctgtaattattggtggcagcatgggaacggcatct
tatgtcttagtcggtacagaaaattctgaaaacaaatcatttggttcagcttgccatggg
gcagggcgggcaatgagccggcatcaggcaagcaaaaaatggcgtgggagtgagatcatt
gagcaattggcgcaacaaggaattttaattcgcagcagctcttatcgtggtgtagcagaa
gaagcgcccgaggcatataagaatgtcgatctcgttgttgatgccgcacaagcgtctggt
ttaactaaaaaagttgcccgactggtacctatcgtttgtgttaaaggatag
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