Legionella cherrii: NCTC11976_02707
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Entry
NCTC11976_02707 CDS
T06506
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcj
Legionella cherrii
Pathway
lcj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC11976_02707 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcj03400
]
NCTC11976_02707 (mfd)
Enzymes [BR:
lcj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC11976_02707 (mfd)
DNA repair and recombination proteins [BR:
lcj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC11976_02707 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
SWI2_SNF2
RecG_dom3_C
DUF4962
Motif
Other DBs
NCBI-ProteinID:
VEB38385
LinkDB
All DBs
Position
1:3056838..3060287
Genome browser
AA seq
1149 aa
AA seq
DB search
MPINTLLYQSTQAKQVWGQLHGSSLALALAEYCQQTPGIKLLIAQDNLSANQLQAELNFF
LNSNSPQELLFFPDWETLPYDQFSPHQDIISERLYTLSRIQQVTDAIVITSASTLMHRLC
PPEFLNQYALMLKEGQKLDLTAFRNQLQQAGYHCVNKVLEHGEFALRGSIIDVYPMGSGL
PFRIELFDDEIESLREFDTETQRTIEKIKEINVLPAREFPLNEQSQLLFRRAFRELFPGN
PSQCPIYEAITEGQYPSGIEYYLPLFFEKTVTFFDYLPENAKICLIENIQNNAEQFWQEL
NERYEQRRYDVSRPILSPPACFINPTELLTKANTYEQLRLFQNPSDKKGAVVNFDIIPGP
QLPIDRKTQEPLNQLRTYCADTTRRYLIVVESAGRREVLLDLLKPSNINPKVQSSWHDFI
NDNAPINITTGDLIYGCELKQSHIVIIVESQLFGEQSTPQRRSAQKTVDPDLIIRDMAEL
RVGAPVVHLQFGVGRYQGLQHIESNGIASEFLVLTYAGEDKIYVPVTSLHLISRYTGVDS
EHAPLHRLGSDQWQKERKKAAEKIHDVAIELLDLYAKREAQPGHQYQIDHNEYVKFASAF
PFTETPDQLQAIEQIIKDMESPRPMDRLICGDVGFGKTEVAMRAAFVAVQNNKQVCILVP
TTLLAGQHFESFRDRFADFPINIELLSRFRSAKETEAVLASLKSGTVDIVIGTHKLFQSK
IAFKNLGLLIIDEEHRFGVKQKEHIKALRTHVDILSMTATPIPRTLNMAMAGIRDISLMT
TPPAKRLAIKTFWQEKKDPIVREAILREILRGGQVFFLHNNVETIDRVCQDLQTLVPEAK
IRSAHGQMRERELERVMSDFYHHRFNVLVCTTIIETGIDIPTANTIIIDRADKFGLAQLH
QLRGRVGRSHHQAYAYLLTPNEKLLTSDAVKRLEAIVSLEDLGAGFTLATHDLEIRGAGE
LLGEEQSGNMQAIGFNLFMEMLDRAVHDLKAGKTPELSAPMHQGPEIELRISAIIPDEYI
PDIHNRLIMYKRIANAKTKEQLHDLQIELIDRFGLLPQQVKHLLLITELKLNAERMGIQK
ISAGAQQGKLEFSENPSIDPGILINLIQVHAKRYQMEGPQRLRFTLDSTSPEERIFEISA
LLNKLNGIK
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccataaataccttactttatcaatcgacacaggctaaacaagtatggggtcagctc
catggaagcagcttagcactggctcttgctgaatattgtcaacaaactcccggaattaag
ttattgattgcccaagataatctcagtgcaaatcaattgcaagcggagttgaatttcttt
ctcaattcaaacagtccccaagaactgttattttttccggattgggaaacactcccttat
gaccaattttcaccccaccaggacattatttcggaacggttgtataccttaagccgtatt
caacaagtgactgatgcaattgtcatcacttcagccagcacattaatgcacagactatgt
ccacccgaatttttaaatcaatatgctttaatgctaaaagaagggcaaaaactggactta
accgcttttcgtaatcaattacaacaagctggttatcattgtgtgaataaagtacttgag
cacggagaatttgccctacgcggatccataattgatgtttatccaatgggttccggttta
ccctttcgtatcgagctttttgacgatgaaattgaaagtctacgagaatttgacacagaa
acacaacgtacaatagaaaaaataaaagaaatcaatgtgttacctgcacgcgagtttcct
ttaaatgaacaaagccagctcctgtttcgacgtgcttttagagaactatttccaggtaat
ccaagtcaatgccctatttatgaagcgatcactgaaggacaatacccttcaggaattgaa
tattaccttcctttattttttgaaaaaacagtcactttttttgattatctcccagaaaat
gccaagatttgtttgattgagaatattcaaaataatgcagagcaattttggcaagaattg
aatgaacgctatgagcaaagacgatatgacgtcagcagacctattttatcgccccctgct
tgttttattaatccaactgaattattaactaaagccaatacctacgagcaattgcgtctg
ttccaaaatccttcggataaaaaaggggctgtggttaattttgatattattccaggccca
caattacccatagataggaaaacacaagaacccttaaaccaacttcgtacttattgtgca
gatacaacacgtcgttatttgattgtagtcgagagtgcgggacggcgtgaagtgttactc
gatttgcttaaaccaagcaacattaatcctaaagtacaatcttcttggcacgatttcatt
aacgataatgctccgatcaacatcactaccggagacctcatttacggatgtgaattaaaa
caaagtcatatcgttattattgttgaatcccaattatttggggagcaaagtacacctcaa
aggcgcagtgcacaaaaaacagttgatcctgacttaattatccgtgacatggctgaactt
cgtgttggtgcgcctgtagttcatttgcaatttggtgtaggacgttatcaaggattacag
catatagaatccaatgggattgcgagtgaatttttagtccttacctatgcaggcgaagac
aagatttatgttcctgtgacctcgcttcacttgattagccgatatactggggtagatagt
gaacatgcccccttacatagactgggttcagatcaatggcaaaaggaaaggaaaaaggcc
gctgaaaaaattcatgatgtggccattgagttacttgatctctacgccaaaagagaagcc
caaccaggacaccaatatcaaatcgatcataatgaatacgttaaatttgccagtgccttt
ccatttacagaaacaccggatcaattacaagcaatcgagcaaatcataaaagatatggag
tccccgagacctatggatcgtttaatttgtggcgatgtaggttttggtaaaacagaagta
gccatgcgcgccgcttttgttgcagtgcaaaacaataaacaagtctgtattcttgtccca
actactttgctggcaggacaacactttgaatccttccgagatcgatttgcagacttcccc
attaatattgagttactttcacgttttcgctcagctaaagaaactgaggcagtgcttgcc
tcattaaaatcaggaacggttgatatagtcatagggactcataaattattccaaagcaag
attgcttttaaaaatcttggattgcttattattgatgaagaacatcgttttggggtcaaa
caaaaagagcacatcaaagcactacgtacccatgtggatattctttccatgaccgcgacc
cctattcctagaacattaaatatggcaatggcaggaataagggacatttctctaatgacc
acacctccagcgaaacgtctggcaattaaaactttttggcaagaaaaaaaggaccctatc
gtccgtgaggcgatcctcagagaaattcttaggggggggcaggtttttttcctacataat
aatgtagaaaccattgatcgtgtctgtcaggatttacaaactctggttcccgaagcaaaa
atacgctcagctcatggacaaatgcgtgaacgtgagttagaacgagtcatgtcggatttc
tatcatcatcgttttaatgtattggtctgtaccaccatcattgaaaccggtatcgacatt
cccactgcgaatacgattattattgatcgcgcagataaatttggtttagcacaattgcat
caattgcgtggacgtgtaggtcgttcgcaccatcaagcctatgcatacctacttactccg
aatgaaaaattattgacctctgatgccgtcaaacgtttagaagccattgtatccttggaa
gatttgggcgcaggcttcactttagcaacccatgatctcgaaattcgtggggcgggtgag
cttttaggtgaagagcaaagtggaaacatgcaagcaattggatttaatttgtttatggaa
atgctcgatagagcagttcatgatttaaaagctggaaagacacctgaattatctgcccct
atgcatcaaggccccgagattgagttacgtatcagtgccattattcctgatgaatatatt
cccgacatccataatcggctcattatgtacaaacgaattgccaatgcaaaaacaaaagaa
caattacatgatttacaaattgagttaattgaccggtttggcttactaccacaacaggta
aaacatttgttattgattactgaattaaaattaaatgcagaacgaatgggtattcaaaaa
attagcgctggtgctcagcaaggcaaactggaatttagtgaaaacccttctattgaccca
ggaattttgattaatttgattcaagtacacgccaaaaggtatcaaatggagggacctcaa
cgcttgcgttttaccctagatagtacttccccagaagagcgtatttttgaaataagtgcc
ctgcttaataaattaaatggaataaaatga
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integrated database retrieval system
