Lichenicola cladoniae: HN018_05180
Help
Entry
HN018_05180 CDS
T07054
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lck
Lichenicola cladoniae
Pathway
lck03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HN018_05180 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lck03021
]
HN018_05180 (rpoC)
03400 DNA repair and recombination proteins [BR:
lck03400
]
HN018_05180 (rpoC)
Enzymes [BR:
lck01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HN018_05180 (rpoC)
Transcription machinery [BR:
lck03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HN018_05180 (rpoC)
DNA repair and recombination proteins [BR:
lck03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HN018_05180 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
UFL1
Motif
Other DBs
NCBI-ProteinID:
QKE89516
UniProt:
A0A6M8HMH8
LinkDB
All DBs
Position
1140899..1145092
Genome browser
AA seq
1397 aa
AA seq
DB search
MNELMKILGQTGQAQTFDQIKIQLASSEQIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKFRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMVDLTLKELEKILYFESYVVLEPGLTDLKLHQLLNEDQLLAKQDEFGEDGFRAG
IGAEAIKTVLISVDCDAEKVKLRADLKDTTSEAKRKKLVKRLKLVEAFAESGSRPDWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFIYSKLEKYGHATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLETAEFRETPDQNEYDDQGKVTKVG
ASAFGSIGEIEFALAEKAIKLHDKIRARYETVDAEGKKVRSTVVTTPGRMLIAQILPKHP
AVPFTLLNKQLTKKNVSDVIDAVYRHCGQKECVIFADRLMGLGFTQAAKAGISFGKDDMI
IPDAKKPLVERTTAEVKEFEQQYQDGLITAGERYNKVVDAWSRCTDEVQAAMMKEISRQE
IGKQTNSVWMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIIANFKEGLSVLDYFT
STHGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGAERGLTVRAVMDGGEVVSS
LSERILGRTTATDVLSPLNGSVVLPRSTLIGEAEAELVENSGVESMLIRSVLTCDSRVGV
CGLCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSMVEASH
DGVVNVKNRNVVQNSMNVPVVMSRNCEIVLTDDKGSERARFRVPYGARLLVDEGATVVRQ
QKLAEWDPYTLPIITERAGKVEYLDLIDSITLVERMDEVTGLTSKIVVDYKQASKGIDLR
PRLQLKDDKGEVLKLGNGGEARYFLSPDSILSVENGATVHAGDVLARIPREGSKTRDITG
GLPRVAELFEARRPKDHAIIAETDGRIEFGKDYKAKRRVIVKNDETQEETDYLVPKGKHV
SVQEGDFVRKGDPLVDGPRVPHDILKVLGVEALSDYLVNEIQDVYRLQGVKINDKHIEVI
VRQMLQKVEVLEPGDTTYLVGETVDRFEFEAENNKRLQANERPAQAMPVLQGITKASLQT
HSFISAASFQETTRVLTEAATAGKVDTLNGLKENVIVGRLIPAGTGSVMNKLRAVAAGRD
KQRVLGRDMPTNIKAAE
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgatgaagatccttggccagaccggccaggcgcagaccttcgaccagatc
aagatccagctggcatcgtcggagcagatccgctcctggtcctacggcgagatcaagaag
ccggagaccatcaactaccgcaccttcaagccggaacgggacggcctgttctgtgcccgc
atctttggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcggatgaagttc
cgcggcatcatctgcgagaagtgcggcgtcgaagtgacgctggcgaaggtgcgccgcgag
cgcatgggccatatcgagctggcctcgccggtcgcccatatctggttcctgaagtcgctc
ccgagccgcatcggcctgatggtcgatctgacgctcaaggagctcgagaagatcctgtat
ttcgagagctacgtggttctcgagccgggcctgaccgacctcaagctgcaccagctgctg
aacgaggaccagcttctcgccaagcaggacgagttcggcgaggacggtttccgggccggt
atcggcgccgaagcgatcaagaccgtgctgatcagcgtcgattgcgacgccgagaaggtg
aagctgcgcgccgacctcaaggacaccacgtccgaggcgaagcgcaagaagctggtcaag
cgcctgaagctggtcgaggcgttcgccgagagcggctcgcgtccggactggatgatcctg
gacgtcgttccggtcattccgccggaactgcgtccgctggtgccgctcgatggcggccgc
ttcgccacgtccgacctgaacgacctgtatcgccgcgtcatcaaccgcaacaacaggttg
aagcgcctgatcgagctgcgcgcgcccgacatcatcgtgcgcaacgagaagcgcatgctg
caggagagcgtcgacgccctgttcgataacggccgccgtggccgcgccatcaccggtgcg
aacaagcgcccgctgaagtcgctgtccgacatgctgaagggcaagcaggggcggttccgc
cagaacctgctcggcaagcgcgtcgactactcgggtcgttcggtaatcgtcgtcggtccc
gagctgaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctactccaagctcgagaagtacggtcacgccaccaccatcaaggctgcgaagcgc
atggtggaaaaggagcgtcccgaggtctgggacatcctcgaggaagtcatccgcgagcat
ccggtgatgctgaatcgcgcgccgaccttgcatcgcctcggcatccaggccttcgagccg
gtgctgatcgaaggcaaggcgatccagctgcatccgctggtctgcaccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgttccgttgagcctcgaagcccagctcgaa
gcccgcgtgcttatgatgtcgaccaacaacatcctgagcccggcgaacggcaagccgatc
atcgtgccgagccaggacatcgtgctcggtctctactacctgtcgctcgagacggccgag
ttccgcgagacgcccgaccagaacgagtacgacgaccagggtaaggtcaccaaggtcggc
gccagcgcgttcggctcgatcggcgagatcgagttcgcgctcgccgagaaggcgatcaag
ctgcacgacaagatccgtgcccgctacgagaccgtcgatgccgaaggcaagaaggtccgc
agcacagtcgtcaccacgccgggccgcatgctgatcgcgcagatcctgccgaagcatccc
gcggtgccgttcaccctgctcaacaagcagctgaccaagaagaacgtctcggacgtcatc
gacgccgtataccgccattgcggtcagaaggagtgcgtgatcttcgccgatcgcctgatg
ggtctcggcttcacgcaggctgccaaggccggcatctcgttcggcaaggatgacatgatc
atcccggacgcgaagaagccgctggtcgagcgcaccacggccgaagtgaaggagttcgag
cagcagtatcaggacggcctgatcactgccggcgagcgctacaacaaggtggtggatgcc
tggtcgcgctgcaccgacgaagtgcaggccgcgatgatgaaggagatctccaggcaggag
atcggcaagcagaccaactcggtctggatgatgagccattccggtgcccgtggatcgccg
gcgcagatgaagcagctggccggcatgcggggcctgatggccaagccgtcgggcgagatc
atcgagcagccgatcatcgccaacttcaaggaaggcctgtcggtcctcgactacttcacc
tcgacccacggcgcccgcaagggtctcgcggacaccgcgttgaagaccgcgaactcgggc
tacctgacccgccgtctcgtcgacgtggcgcaggattgcatcatcgtcgaagaggattgc
ggcgccgagcgcggcctgacggtgcgcgcggtgatggatggcggcgaggtcgtgtcctcg
ctgtccgaacggatcctcgggcggaccaccgcgaccgacgtgttgtcaccgctgaacggc
agtgtcgtgctgccgcgcagcacgctgatcggcgaggcggaagccgagctggtcgagaac
tccggcgtggagagcatgctcatccgctcggttctcacctgcgacagccgcgtcggcgtc
tgcggcctgtgctacgggcgcgatctcgcccgcggcacgccggtcaacatcggcgaggcg
gtcggcgtgatcgccgcccagtcgatcggcgagcctggaacccagctgaccatgcgcacc
ttccatatcggtggtgcggcccagcgcggtgccgagcagtcgatggtcgaggcgtcgcat
gacggcgtggtcaacgtgaagaaccgcaacgtcgtgcagaacagcatgaacgtgccggtg
gtgatgtctcgtaactgcgagatcgtgctgaccgacgacaagggcagcgagcgcgcgcgc
ttccgcgtcccctacggcgccaggttgctggtggacgagggtgcgacggtcgtgcggcag
cagaagctggccgagtgggacccgtacacccttccgatcatcaccgagcgcgccggcaag
gtcgaatacctcgacctgatcgacagcatcacgctggtcgagcggatggacgaagtcacc
ggcctgacctcgaagatcgtcgtcgactacaagcaggcctccaagggcatcgatcttcgc
ccgcggctgcagctcaaggacgacaaaggcgaggtgctcaagctcggcaacggcggcgag
gcgcgctacttcctgtcgccggactcgatcctctcggtcgagaacggcgccacggtgcat
gccggcgacgtgctggcgcgtatcccgcgcgagggcagcaagacccgcgacatcaccggc
ggtctgccgcgcgtggccgagctgttcgaggcgcggcgtccgaaggaccatgcgatcatc
gcggagaccgacggccgcatcgagttcggcaaggactacaaggccaagcgccgggtgatc
gtgaagaacgacgagacccaggaagagaccgactacctggtcccgaagggcaagcacgtc
tcggtgcaggaaggcgacttcgtgcgcaagggcgacccgctggtcgatggtccgcgggtg
ccgcacgacatcctcaaggtgctcggcgtcgaggcgctgtcggactacctggtcaacgaa
atccaggacgtctaccggctccagggcgtgaagatcaacgacaagcacatcgaggtcatc
gtccggcagatgctgcagaaggtggaagtgctcgagccgggtgacacgacctacctggtc
ggtgaaacggtcgatcgcttcgagttcgaggcggagaacaacaagcgcctgcaggcgaac
gagcgtccggcacaggcgatgccggtgctccagggcatcaccaaggcctcgctgcagacc
cactcgttcatctccgcggcgtccttccaggagaccacgcgcgtgctcaccgaggcggcc
acggccggcaaagtggatacgctcaacggcctcaaggaaaacgtcatcgtcggccgcctg
atccccgcgggaacgggcagcgtgatgaacaagctgcgtgccgtggccgctggccgcgac
aagcagcgtgtgctgggtcgcgacatgccgacgaacatcaaggcggcggagtag
DBGET
integrated database retrieval system
