KEGG   Lichenicola cladoniae: HN018_10645
Entry
HN018_10645       CDS       T07054                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
lck  Lichenicola cladoniae
Pathway
lck02024  Quorum sensing
lck03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lck00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HN018_10645 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HN018_10645 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lck03019]
    HN018_10645 (hfq)
   03036 Chromosome and associated proteins [BR:lck03036]
    HN018_10645 (hfq)
Messenger RNA biogenesis [BR:lck03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HN018_10645 (hfq)
Chromosome and associated proteins [BR:lck03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HN018_10645 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: QKE90430
UniProt: A0A6M8HQ70
LinkDB
Position
2293224..2293532
AA seq 102 aa
MAKDNSQNVQDVFLNHVRRSKTPVTIFLVNGVKLQGIITWFDNFSVLLRRDGHTQLVYKH
AISTVMPAAPIALFDQNKVEGGVAVPAGAETEQEVALMKSIV
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggacaactcgcagaacgtgcaggacgtatttctcaatcacgtccgtcgttcc
aagactccggtgacgattttcctggtcaacggcgtcaagctccaggggatcatcacctgg
ttcgataacttctcggtcctgttgcgtcgggatgggcacacccagctcgtctacaagcac
gccatcagcaccgtgatgccggcggcgccgatcgccttgttcgatcagaacaaggtcgag
ggtggcgttgccgttcccgccggcgccgagaccgagcaggaagtggcgctgatgaaaagc
atcgtctga

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