Lichenicola cladoniae: HN018_11080
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Entry
HN018_11080 CDS
T07054
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lck
Lichenicola cladoniae
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lck03032
]
HN018_11080
03400 DNA repair and recombination proteins [BR:
lck03400
]
HN018_11080
Enzymes [BR:
lck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HN018_11080
DNA replication proteins [BR:
lck03032
]
Prokaryotic type
DNA Topoisomerases
HN018_11080
DNA repair and recombination proteins [BR:
lck03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HN018_11080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Myo1_CA
zf-HC2
Motif
Other DBs
NCBI-ProteinID:
QKE90507
UniProt:
A0A6M8HQE0
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All DBs
Position
complement(2385815..2386981)
Genome browser
AA seq
388 aa
AA seq
DB search
MAKKAASGKVAPRPDLADVSVDGREAARAAHLHYVDDSKPGFTRRLGPDGLTYFAPNGEA
VTDEAVLVRLKKLAVPPAYTDVWICRDPKGHLQAVGRDARGRKQYRYHPDWRSIRDEAKY
GKMLVFGEKLPALRAQVQKDLTRPGLPRAKVLATVVALLEKTMMRIGNDEYAKTNKSFGL
TTLRRRHAKVSGTGLVLDFRAKHGIQQHIELKDRRLAGIVSRLQELRGQELFQYLDEDGI
QHDISSHDVNEYLQEVTGEDITAKDFRTWAATNLAALALHEFEQFDSEAKAKKNVLRAIE
TVAKLLGNTPAICRKCYIHPRIFDGYMDGSLAEALRARVEAALAPESRAQTGLTAEEVAV
MAFLSRTLDHIADQGTVPTRALEAAGAL
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaaggctgcatcggggaaggtggcgccgcgccccgacctggcggacgtgtcg
gtggatggacgcgaggcggcgcgggcggcgcatctgcattatgtcgacgacagcaagccg
ggctttacgcgcaggctgggtccggatgggctgacgtatttcgcgccgaacggcgaggcg
gtcaccgatgaggccgtgctggtccggctgaagaagctcgcggttccgccagcctatacc
gacgtctggatctgccgcgacccgaaagggcacctgcaggcggtgggccgggacgcgcgg
ggccgcaagcagtaccgctaccacccggactggcgctcgatccgggacgaggcgaaatac
ggcaagatgctggtgttcggcgagaagctgccggcgctgcgggcgcaggtgcagaaggac
ctcacccggcccggactgccgcgggcgaaggtgctggcgaccgtggtggcgctgctcgag
aagaccatgatgcggatcggcaacgacgagtatgccaagaccaacaagagcttcgggctg
accacgctgcgccgccggcatgccaaggtcagcggcaccggcctggtgctcgatttccgg
gccaagcacggcatccagcagcatatcgagctgaaggaccggcgtctggccggtatcgtc
tccaggctgcaggaactgcgcgggcaggagttgttccagtatctcgacgaggacggcatc
cagcacgacatctcgtcgcatgacgtgaacgagtatctgcaggaggtgaccggcgaggac
ataacggccaaggatttcaggacctgggcggcgaccaacctcgcggcgctggcgctgcat
gagtttgagcagttcgacagcgaggcgaaggccaagaagaacgtgctgcgggcgatcgag
accgtggccaagctgctcggcaacacgccggcgatctgccgcaaatgctacatacatccc
aggattttcgatggctacatggatggctcgctggccgaggcgctgagagcacgcgtggaa
gcggccctggcgcccgagagccgcgcccagaccgggctgactgccgaggaggtcgctgtg
atggcgttcctcagccgcaccctcgaccacatcgcggatcagggcaccgtcccgactcgg
gcgctggaggctgcaggggcgctctag
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