Lichenicola cladoniae: HN018_11100
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Entry
HN018_11100 CDS
T07054
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lck
Lichenicola cladoniae
Pathway
lck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HN018_11100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lck03019
]
HN018_11100
Messenger RNA biogenesis [BR:
lck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HN018_11100
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GFIT
Motif
Pfam:
RNase_J_b_CASP
RMMBL
Lactamase_B_2
Lactamase_B
RNase_J_C
Motif
Other DBs
NCBI-ProteinID:
QKE90511
UniProt:
A0A6M8HQK2
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All DBs
Position
complement(2390744..2392390)
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AA seq
548 aa
AA seq
DB search
MNELNGDLAFLPLGGTGEIGMNLNLYRCDGTWLAVDCGIGFGGSETPEAEILMPDPSFIA
DRRSALIGLVITHAHEDHLGAVAHLWPQLRCPVYATPFAAAVLRRKLGEAQLLGQVPLHV
IPTNGKFELGPYKLEFLQMTHSVPEAQALVLRTPYGTVLHSGDWKLDPNPLVGPPTNLEA
FAELGREGVLAMVCDSTNAMVEGESGSEADVRRSMATLIRSISGRIAVTCFASNVARVES
IALAAEAAGRSVVIVGRSLRNLDVAARECGYLRDVPEFLSEQDAEDIPDDNLLLIVTGSQ
GEPRSALSRIASDTHQNISLGEGDTVVYSSRMIPGNERAVMAVQDNLVKRGVRVLTDRDH
SVHVSGHAARDEIRRLYGLVKPRFAVPVHGEWRHLTAHAELAREEGVTPILLEDGDILNL
APGRVEVVDSAPVGRLALDGNRILPMNGGVLAARRKMLFNGMVLASLVIDGGGRVLGKPK
LSAPGLFEVDDAESIRVTGAFAASLAEIPANVRQDEDGFRDAAKTALRRALGRKLQKRPL
VDVHLMRI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattgaacggcgatctggccttcctgcccctgggtgggacgggcgagatcggc
atgaacctcaacctctaccggtgcgacggcacctggctcgcagtcgattgcgggatcggg
ttcggcggcagcgagacgcctgaagcggagatcctgatgccggatcccagcttcatcgcc
gatcgccgcagcgcgctgatcgggctggtcattacccatgcgcacgaggaccatctcggc
gcggtggcgcatctctggccgcagcttcgctgcccggtctatgcgaccccgttcgcggcg
gcggtgctgcgacgcaagctcggcgaagctcagctgcttggccaggtgccgctgcatgtg
atcccgacgaacggaaagttcgagctcgggccttacaagctcgagttcctgcagatgacc
cactccgttcccgaggcgcaggcgcttgtgctgcggacgccctacggcacggtgctgcac
agcggcgactggaaactggatcccaatccgctggtcgggcccccgaccaacctggaggcc
ttcgccgagctcggccgcgagggcgtgctggcaatggtgtgcgacagcaccaatgcgatg
gtcgagggtgaatccggttccgaggcggatgtccggcgcagcatggcgacgctgatccgc
agtatcagcggacggatcgcggtcacatgtttcgccagcaacgtggcgcgggtcgagagc
atcgcgcttgcggcggaggcagccgggcgttcggtggtgatcgtcgggcggtcattgcgc
aacctcgacgtggcggcccgcgagtgcggctatctgcgcgatgtgcccgagttcctgtcc
gaacaggatgcggaggatatccccgacgacaacctgctgctgatcgtgaccggcagccag
ggcgagccacgcagcgccttgtcgcgcatcgccagcgacacgcaccagaacatctcgctc
ggcgagggtgacacggtcgtctattcgagccgcatgatcccaggcaacgagcgcgcggtc
atggccgtgcaggataacctggtcaagcgcggcgtccgggtgctgaccgatcgcgatcac
agcgtccatgtgtccggtcatgcggcgcgcgacgagatccgccggctgtacgggctggtg
aagccgcgcttcgcggttccggtgcatggcgagtggcgccacctgaccgcccatgccgaa
ctggcacgcgaggagggggtgacgccgatcctgctggaggatggcgacatcctcaatctg
gcaccgggccgggtcgaggtcgtcgatagcgccccggtcggacgtctcgcgttggacggt
aaccgtatcctgccgatgaatggcggcgttctcgcggcacgtcgcaagatgctgttcaac
gggatggtgctggccagcctcgtcatcgatggcgggggccgtgtgctgggcaagcccaag
ttgagcgcgcccgggctgttcgaggtcgatgacgccgaatcgatccgggtcaccggtgcc
tttgcggcgagccttgctgagattcccgccaacgtccgccaggacgaggacgggttccgc
gacgctgccaagacggcgttgcggcgtgctcttggacgcaagctgcagaagcggccgctc
gtggatgtacacctgatgcggatttaa
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