Lichenicola cladoniae: HN018_15185
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Entry
HN018_15185 CDS
T07054
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lck
Lichenicola cladoniae
Pathway
lck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HN018_15185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lck03019
]
HN018_15185
03009 Ribosome biogenesis [BR:
lck03009
]
HN018_15185
Enzymes [BR:
lck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HN018_15185
Messenger RNA biogenesis [BR:
lck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HN018_15185
Ribosome biogenesis [BR:
lck03009
]
Prokaryotic type
rRNA helicases
HN018_15185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
SVN
Motif
Other DBs
NCBI-ProteinID:
QKE91210
UniProt:
A0A6M8HSA2
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All DBs
Position
3341009..3342889
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AA seq
626 aa
AA seq
DB search
MPFPATHPTLASALLARGYEEPTPVQLAVLQPETEGRDLLVSAQTGSGKTVAYGLAAAPT
LMGDADRLPRATAPLALVIAPTRELAMQVHKELAWLYADAGARIVACIGGMDVRREARAL
EGGCHIVVGTPGRLCDHLSRGRLNTGSLRVVVLDEADEMLDLGFKDELEQILSATPTDRR
TLLFSATIAREIATLARKYQRDAMRIDTVSGTRQHADIDYRAVLAAPNEAEHAVVNVLRW
FESPTAMVFCSTRDMVRHMQSSLQERGFSAVALSGELSQAERTRALDALRSGGARVCVAT
DVAARGIDLPDLGLVIHAALPSDSATLLHRSGRTGRAGRKGTCVLVVPAIRRRKAEQLLA
GARVQAHWSGAPTADEIRTRDGERLLADPILTEEFTPEDQALGQALLAGRSPEEIAAALV
RLYRANLPDPEEIRAMSVGPERRPQAVHGSNERYERAERPARAPRADRSGDDRPRPERSN
DDRPRPERSNDDRSNEPSVWFGMPIGRQDKADPKWLVPLICRLGGVTKRDIGSIKIFDGE
TRFEITQSMAERFTACIAATDDDEVTISASSAPTTGTSPRPQRDASGPGYNKEAYNKGAP
PRRSSAAPADRRRTAPKLNSSRKRAS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgccttttcccgcgacccaccctaccctcgccagcgccctgctcgcgcgcggctatgag
gagccgacaccggtccagctcgctgtgctgcaaccggagacggaggggcgcgatctgctc
gtctctgcacagaccggttccggcaagaccgtcgcctatggcctggctgccgccccgacc
ctcatgggcgatgccgaccggttgccgcgcgccaccgcgccgctcgccctggtgattgcc
ccgacgcgcgagctggcgatgcaggttcataaggaactggcatggctctacgccgacgcc
ggcgcacggatcgtcgcatgcatcggcggcatggacgtgcgccgcgaggcccgcgcgctt
gaaggcggttgccacatcgtcgtcggaacgcccggccgcctctgcgaccatctgtcacgc
ggccgcctcaacaccggatcgctgcgcgtcgtcgtgctcgacgaggccgacgagatgctg
gacctcggcttcaaggacgagctcgagcaaatcctgagcgccacgccgaccgatcggcgc
acgctgctgttctcggccaccatcgcccgggagatcgccactctcgcacgcaagtatcag
cgcgacgcgatgcgcatcgataccgtgtccggcacccgccagcacgccgacatcgactac
cgcgccgtgctcgcggctccgaacgaggccgagcatgcggtcgtgaacgtactgcgctgg
ttcgagagcccgaccgcgatggtgttctgttccacccgcgacatggttcgccacatgcag
agcagcctgcaggagcgtggtttctccgccgtcgccctgtccggcgaactcagccaggcc
gaacggacccgcgcccttgatgcgctgcgcagcggcggcgcccgggtttgtgtcgcgacc
gacgttgcggcccgcggcatcgacctgcccgacctcgggctggtcatccatgccgccttg
ccgagcgacagcgccacgttgctgcaccggagtggccgcaccggccgcgccgggcgcaag
ggcacctgcgtcctggtggtgccggcgatccgccgtcgcaaggccgagcagctgctggcc
ggcgcgcgcgtgcaggcccattggagcggcgctccgaccgccgacgagatccgcacccgc
gacggcgagcgcttgctggccgacccgatcctgaccgaggagttcacccccgaggaccag
gcgctcggacaggccctcctggccggacgcagccccgaggaaatcgccgcggcgctggtt
cggctgtatcgcgccaacctgcccgatccggaagaaatccgcgcgatgtcggtcggaccg
gagcgccggccccaggccgtgcatggctccaacgagcgctatgagcgtgccgagcgcccg
gcgcgtgctccgagagccgaccgatccggcgatgaccgtccacgtcccgaacgctcgaac
gacgatcgcccgcgtccggagcgctcgaacgacgaccgctcgaacgagccgagcgtctgg
ttcgggatgccgatcggtcgccaggacaaggccgatccgaagtggctggtgccgctgatc
tgccgtctcggtggcgtgaccaagcgcgatatcggctcgatcaagatcttcgacggcgag
acccgcttcgagatcacccagtcgatggccgagcgcttcactgcctgcatcgccgcgacc
gacgatgacgaggtcaccatctcggcgtcgtcggcaccgaccaccggcacgtctccgcgt
ccgcagcgcgatgcgtccggcccgggctacaacaaggaagcctacaacaagggcgcgccg
ccgcgtcgcagttctgctgctcccgccgatcgccgacgcaccgcgcccaagctcaactcg
tcgcgcaagcgcgcttcctag
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