Lichenicola cladoniae: HN018_17540
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Entry
HN018_17540 CDS
T07054
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
lck
Lichenicola cladoniae
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lck03016
]
HN018_17540 (rnd)
Enzymes [BR:
lck01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HN018_17540 (rnd)
Transfer RNA biogenesis [BR:
lck03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HN018_17540 (rnd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QKE91595
UniProt:
A0A6M8HTQ1
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All DBs
Position
complement(3878099..3879277)
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AA seq
392 aa
AA seq
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MSRPARARFPEPKLITASDDLAAVVERLRSERFVTIDTEFVRERTYWPELCVVQLAGESE
VAIIDAEAEGLDLQLLAPLLDDPAVVKVFHAARQDLEIFLYKFGRLPVAMFDTQVAAMVA
GFGDQVGYDSLVSALTGGQIDKAHRFSDWSRRPLSPAQIAYAAADVTHLRDVYVKLCERL
ERDGRAEWVGEEMACLSDPVTFRPDPDGLWERLRPRTGNRRMLGVLRGITAWREREAQRV
NVPRQRLLKDESLLEIAATAPANADALSAMRGVSRGFADGRSGIGLLEAIAAAQALPEDS
LPAAPRKDGPRPSPALVSLLKVLLAAKCEQHDVAPRLLASSDDIDRLAIEAEPEIPALHG
WRREVFGNDALSLKAGQISLGVDGRRIRLLRP
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtcctgcccgggcccggtttccggagcccaagttgatcaccgcgagcgacgat
ctggccgcggtcgtcgaaagactccgaagcgaacgctttgtcaccatcgataccgagttc
gtcagggaacgaacctactggccggagctgtgcgtcgtgcagctcgccggcgagagcgag
gtggcgatcatcgacgcggaggccgagggcctcgacctacaactgctggcaccgttgctg
gacgatccggccgtggtcaaggtgttccacgccgcccggcaggacctggagatcttcctc
tacaagttcggccggctgccggtcgccatgttcgacacccaggtcgctgccatggtggcg
ggcttcggcgaccaggtcggctacgacagcctggtgtcggcgctgaccggcggccagatc
gacaaggcgcaccgcttcagcgactggtccaggcggccgctgtcgccggcgcagatcgcc
tatgccgccgccgacgtcacccatctgcgcgatgtctatgtgaagctgtgcgagcggctc
gagcgcgacggccgggcggaatgggtcggcgaggaaatggcctgcctgtccgatccggtc
accttccgtcccgatccggacggcctgtgggagcggctgcgcccacgtaccggcaatcgc
cgcatgctcggtgtgcttcgcgggatcaccgcctggcgggagcgtgaggcccagcgcgtc
aacgtgccgcgccagcgcctgctcaaggacgagagcctgctcgagatcgccgccaccgcc
ccagccaatgccgacgcattgagtgccatgcgcggcgtcagccgcggcttcgccgacggc
cgcagcggcatcggcctgctcgaggcgatcgcggcagcccaggccctgccagaggacagc
ctcccggcggcaccgcgcaaggacgggcccaggccatcgccggccctggtatcgctgctc
aaggtcctgctggcggccaagtgcgaacagcatgacgtcgccccgagactgctcgcgtcc
tcggacgatatcgaccggctggcgatcgaggccgaaccggagatcccagcactgcatgga
tggcggcgcgaggtattcggaaacgacgctttgtctctcaaggcgggacaaatctcactg
ggcgtcgatgggcggcggatcaggttgttacgcccctga
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