Lichenicola cladoniae: HN018_19905
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Entry
HN018_19905 CDS
T07054
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lck
Lichenicola cladoniae
Pathway
lck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HN018_19905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lck03019
]
HN018_19905
Enzymes [BR:
lck01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HN018_19905
Messenger RNA biogenesis [BR:
lck03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HN018_19905
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
YbbR
Helicase_RecD
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QKE91996
UniProt:
A0A6M8HUS0
LinkDB
All DBs
Position
complement(4376693..4378036)
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AA seq
447 aa
AA seq
DB search
MTTFADLKLSEPLLRALTEEGYETPTPIQSGAIPFLLEGRDLLGLAQTGTGKTAAFALPI
LHRLAQHRVPHTPKGPRVLVLAPTRELAAQIDESFVTYARHMRLSHAVIFGGVGQGRQVE
AMRRGVDVLVAAPGRLLDLVGQGHIDLSNVEVLVLDEADRMLDMGFVRDIRRVVSMIPKE
RQTLLFSATMPKSISELAGGLLRDPARVEVTPPSTTVERIRQAVMFVDDSNKKQAVLMLV
QSPKVVRAIVFTLMKHEANKVAEFLCKEGIAAEAIHGNKSQGARERAMAGFRSGAVKVLV
ATDIAARGIDVDEISHVFNYDLPNVPESYVHRIGRTGRAGREGWAVSLCDAEQRAWLRDI
EREIGMPLPVFMDHPFHSEMASSSTMKPPVLGAGGRGRGGQQGGQRSGSQNHGASRSGAG
GRGPGGAPGGNRNGGGGRRPSGGQRAA
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaccactttcgcagacctcaagctgtccgagcctcttcttcgtgcgttgaccgaggaa
ggctacgagacgcccaccccgatccagtcgggcgccatcccctttctgctcgaaggccgc
gacctgctcggcctggcccagaccggcaccggcaagaccgccgccttcgcattgccgatc
ctgcaccgtctggcgcagcaccgggtcccgcataccccgaaaggcccgcgcgtcctcgtg
ctggcaccgacccgtgagctcgccgcccagatcgacgagagcttcgtcacctacgcccgt
cacatgcgtctcagccatgcggtgatcttcggcggtgtcggccagggccgtcaggtcgag
gcgatgcgccgcggcgtggacgtgctcgtggcagcccccggccgcctgctcgacctggtc
ggccagggccatatcgatctgtctaacgtcgaggttctcgttctcgacgaggccgatcgc
atgctcgacatgggcttcgtgcgcgatatccgccgcgtcgtctcgatgatcccgaaggag
cgccagacgctgctgttctcggccaccatgccgaagagcatctccgaactcgccggcggc
ctgctgcgcgatccggcccgcgtcgaagtgacgccgccctccaccacggtcgagcgtatc
cgccaggccgtgatgttcgtcgacgacagcaacaagaagcaggccgtgctgatgctggtg
cagtcgccgaaagtcgtgcgcgccatcgtgttcacccttatgaagcacgaagccaacaag
gtcgccgagttcctgtgcaaggaaggcatcgccgccgaggcgatccacggcaacaagagc
cagggcgctcgcgagcgcgccatggccgggttccgctccggcgccgtcaaggtgctggtc
gcgaccgatatcgcggcacgcggcatcgatgtcgacgagatcagccacgtcttcaactac
gatctgccgaacgttccggaaagctacgttcatcgcatcggccgcaccggccgtgccggt
cgcgagggttgggcggtgtcgctgtgcgatgccgagcagcgcgcctggttgcgcgacatc
gagcgcgagatcggcatgccgttgccggtgttcatggatcatccgttccattccgagatg
gcatccagctcgaccatgaagcccccggtcctgggtgccggcggccgcggtcgtggcggc
cagcagggtggccagcggtccggcagccagaatcacggagcctcgcgttccggtgccggc
ggtcgtggtccgggcggtgcgccgggtggcaaccgcaacggtggcggcgggcgtcgtcca
tccggtggccagcgcgccgcctga
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