Lacticaseibacillus paracasei LOCK919: LOCK919_1238
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Entry
LOCK919_1238 CDS
T02729
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lcl
Lacticaseibacillus paracasei LOCK919
Pathway
lcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOCK919_1238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcl03019
]
LOCK919_1238
03400 DNA repair and recombination proteins [BR:
lcl03400
]
LOCK919_1238
Enzymes [BR:
lcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOCK919_1238
Messenger RNA biogenesis [BR:
lcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOCK919_1238
DNA repair and recombination proteins [BR:
lcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOCK919_1238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
TadB_TadC_N
Motif
Other DBs
NCBI-ProteinID:
AGP67939
UniProt:
A0AAP4JL85
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All DBs
Position
1212397..1214175
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AA seq
592 aa
AA seq
DB search
MIAPQAETILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGL
TLVVSPLIALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGRIKLLYVAPERFD
TDWFVQRLGSTDISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATP
RVAQDICQRLAIPADGMINTGFERSNLSFKVVRDQDEDRYLLDYLKLNVDQAGIIYASTR
KEVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSNVR
FVIHAQIPKDVESYYQEAGRAGRDGLPSEAILLFKPQDLQVQRFFIDQSEGDDEHKQRQY
EKLKMMERYANTDQCLQQFILNYFGQNGTNPCGRCSNCLDDRESVDVTVDAQKVLSCVVR
LHERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMSSRRQRDITTFIDFLVAGGYLETR
GGQYPTLGLTAKGAEVLRGQAQVFQKTAQKAEQHLEVDDTVFQELRSTRRQLAEQQHLPP
YMIFSDKTLKAIGSAMPQSLDELMAVKGVGQAKLDKYGQIFLDVLQAIKAKA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgccgcaagcggagacaattttaaaggaaaaatttggctatgatcattttcgt
gctggtcaaaatcaggccatcagtcgcgttttggctggtgaaagcacgctggttgtgatg
ccaacaggcggcgggaaatcgttgtgttatcagattccagcgatgttgttgtcgggattg
acgctcgtggtgtcgccgctcatcgcgttgatgaaggatcaggtggatgcgttgaacgat
aacgggatcccggcggctttcattaatagtacccttgattatcaagagattgctgatcgt
cttgaccaagcaagaagtggtcggattaaattgttatatgttgccccagaacggtttgac
acggattggtttgtgcaacggcttggcagcaccgatatttcgttatttgcaattgatgaa
gcccattgtatttctcaatggggtcacgattttcgaccgagttatttgaatctggcgaat
gtggcggctcaattgccttcgcagccaccggtcattgccttgaccgcaacggccacaccg
cgagttgcgcaggatatttgccagcgactggcgattccggctgacgggatgattaatact
ggttttgagcgaagtaatctgagcttcaaggtcgtgcgcgatcaggatgaagatcggtat
ctattagattacctgaaactgaatgtcgatcaggcgggcatcatctatgccagcacccgt
aaagaagttgaccgtttgtatacctttttggcacataagaagttgcctgtggccaaatat
cacgcgggcatgagtgaagcgcagcgtgctgctaatcaggaagactttttgtttgatcgc
aaaccaattatgattgcaacgaatgcgttcggcatgggtattgataaaagcaacgtgcgg
tttgtcattcacgcccagattcccaaagatgtcgaatcgtattatcaagaagccggtcgg
gctggtcgtgatggcttgccgagtgaggcaattttgctgtttaagccgcaagatctccag
gttcagcggttcttcatcgatcaatccgaaggcgatgacgagcacaaacagcggcaatat
gagaagttgaaaatgatggaacggtatgcgaacacagatcagtgtttgcaacagtttatt
ttgaactatttcggtcaaaacgggacaaacccatgtggtcggtgttcgaattgtttggat
gaccgggaatcagtggatgttacggttgatgcgcagaaggtcttatcttgtgtggttcgc
ttgcatgaacgttttggcaaaggcgttgtggcgcaagtgctggcgggggcccacaatcag
cgggtattgtcgtttcatctagatcaattgtcaacttatgggttgatgagcagtcgtcgt
caacgcgacattacaacgttcatagattttctggtggctggcggttatttagaaacccgc
ggtggtcagtacccaactctgggcttaacggccaaaggcgctgaggttcttcgcggacaa
gcgcaagtattccagaagacggcgcaaaaagccgagcagcatctcgaagtcgacgacact
gtctttcaggaactgcgcagtactcggcgacaactggcggagcagcagcatttaccgcct
tatatgattttctctgataagacgttgaaggcaattggcagcgccatgccgcaaagtctt
gatgagttgatggcggtcaaaggcgtcgggcaggcgaagttggataagtatggccaaatc
tttttggatgtcctgcaggcgattaaggccaaggcttga
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